LINC00836

Summary

LINC00836 (long intergenic non-protein coding RNA 836, HGNC:44915) is a long non-coding RNA gene on chromosome 10p12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:44915
Approved symbol	LINC00836
Name	long intergenic non-protein coding RNA 836
Location	10p12.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000280809
Ensembl biotype	lncRNA
Entrez	101929052
RNAcentral	URS000075DC05 — lncRNA, 1901 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 24 — 24 lncRNA

ENST00000625325, ENST00000626230, ENST00000628620, ENST00000628907, ENST00000648557, ENST00000653175, ENST00000654120, ENST00000655020, ENST00000655478, ENST00000655555, ENST00000655854, ENST00000655911, ENST00000656265, ENST00000658893, ENST00000659066, ENST00000662090, ENST00000663043, ENST00000666205, ENST00000668934, ENST00000669089, ENST00000671596, ENST00000777093, ENST00000777094, ENST00000777095

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000625325 — 5 exons

Exon	Start	End
ENSE00003761971	25716745	25716981
ENSE00003762178	25652869	25653042
ENSE00003765247	25651768	25651799
ENSE00003773434	25731621	25731672
ENSE00003774087	25695867	25695953

Expression profiles

Bgee: expression breadth ubiquitous, 146 present calls, max score 79.60.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.5451 / max 78.0656, expressed in 79 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
104377	0.5451	79

Top tissues by expression

232 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.60	silver quality
buccal mucosa cell	CL:0002336	72.60	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	70.78	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	70.52	gold quality
colonic epithelium	UBERON:0000397	70.46	silver quality
spinal cord	UBERON:0002240	68.86	gold quality
endothelial cell	CL:0000115	68.37	gold quality
substantia nigra	UBERON:0002038	67.90	gold quality
bone marrow cell	CL:0002092	66.06	silver quality
midbrain	UBERON:0001891	65.45	gold quality
hypothalamus	UBERON:0001898	64.67	gold quality
right hemisphere of cerebellum	UBERON:0014890	63.80	gold quality
cerebellar hemisphere	UBERON:0002245	63.45	gold quality
cerebellar cortex	UBERON:0002129	63.43	gold quality
cerebellum	UBERON:0002037	61.92	gold quality
hindlimb stylopod muscle	UBERON:0004252	61.81	gold quality
monocyte	CL:0000576	60.89	gold quality
ventricular zone	UBERON:0003053	60.14	gold quality
mucosa of paranasal sinus	UBERON:0005030	59.64	gold quality
cortical plate	UBERON:0005343	59.60	gold quality
ganglionic eminence	UBERON:0004023	59.54	silver quality
prefrontal cortex	UBERON:0000451	58.36	gold quality
corpus callosum	UBERON:0002336	57.32	gold quality
Ammon’s horn	UBERON:0001954	57.02	gold quality
superficial temporal artery	UBERON:0001614	56.23	gold quality
Brodmann (1909) area 9	UBERON:0013540	55.88	gold quality
calcaneal tendon	UBERON:0003701	54.90	silver quality
nasal cavity epithelium	UBERON:0005384	53.69	gold quality
oocyte	CL:0000023	53.25	gold quality
brain	UBERON:0000955	53.14	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	6.05

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.