LINC00838

Summary

LINC00838 (long intergenic non-protein coding RNA 838, HGNC:44963) is a long non-coding RNA gene on chromosome 10p11.22.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:44963
Approved symbol	LINC00838
Name	long intergenic non-protein coding RNA 838
Location	10p11.22
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261683
Ensembl biotype	lncRNA
Entrez	100505583
RNAcentral	URS000075AE90 — lncRNA, 2967 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000562956, ENST00000658358, ENST00000661641, ENST00000664665, ENST00000669458, ENST00000737812

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000562956 — 3 exons

Exon	Start	End
ENSE00002596779	33765750	33767346
ENSE00002610932	33772183	33772658
ENSE00002614248	33759713	33760575

Expression profiles

Bgee: expression breadth broad, 15 present calls, max score 88.78.

Top tissues by expression

174 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	88.78	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.94	gold quality
testis	UBERON:0000473	55.95	gold quality
left testis	UBERON:0004533	55.83	gold quality
right testis	UBERON:0004534	53.61	gold quality
ovary	UBERON:0000992	53.09	gold quality
gastrocnemius	UBERON:0001388	51.46	gold quality
upper leg skin	UBERON:0004262	49.40	silver quality
islet of Langerhans	UBERON:0000006	46.00	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
anatomical system	UBERON:0000467	42.52	gold quality
vastus lateralis	UBERON:0001379	42.47	gold quality
material anatomical entity	UBERON:0000465	42.46	gold quality
vagina	UBERON:0000996	42.46	gold quality
quadriceps femoris	UBERON:0001377	42.40	gold quality
multicellular organism	UBERON:0000468	42.34	gold quality
blood	UBERON:0000178	42.05	gold quality
heart left ventricle	UBERON:0002084	41.97	gold quality
buccal mucosa cell	CL:0002336	41.86	gold quality
female reproductive system	UBERON:0000474	41.76	silver quality
skeletal muscle tissue	UBERON:0001134	41.57	gold quality
tendon	UBERON:0000043	41.42	gold quality
prefrontal cortex	UBERON:0000451	41.35	gold quality
adult mammalian kidney	UBERON:0000082	41.34	gold quality
superficial temporal artery	UBERON:0001614	41.33	gold quality
heart	UBERON:0000948	41.27	gold quality
cardiac ventricle	UBERON:0002082	41.15	gold quality
bone marrow	UBERON:0002371	41.14	gold quality
palpebral conjunctiva	UBERON:0001812	41.10	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.78

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.