LINC00841

Summary

LINC00841 (long intergenic non-protein coding RNA 841, HGNC:27430) is a long non-coding RNA gene on chromosome 10q11.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27430
Approved symbol	LINC00841
Name	long intergenic non-protein coding RNA 841
Location	10q11.21
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233395
Ensembl biotype	lncRNA
Entrez	283033
RNAcentral	URS0000A766AF — lncRNA, 989 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 27 — 27 lncRNA

ENST00000446107, ENST00000451929, ENST00000654894, ENST00000657555, ENST00000658736, ENST00000660538, ENST00000664261, ENST00000667054, ENST00000667785, ENST00000670971, ENST00000826345, ENST00000826346, ENST00000826347, ENST00000826348, ENST00000826349, ENST00000826350, ENST00000826351, ENST00000826352, ENST00000826353, ENST00000826354, ENST00000826355, ENST00000826356, ENST00000826357, ENST00000826358, ENST00000826359, ENST00000826360, ENST00000826361

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000446107 — 2 exons

Exon	Start	End
ENSE00004237138	43913759	43914508
ENSE00004237151	43912390	43912478

Expression profiles

Bgee: expression breadth ubiquitous, 117 present calls, max score 92.36.

Top tissues by expression

215 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	92.36	gold quality
left testis	UBERON:0004533	78.21	gold quality
right testis	UBERON:0004534	77.90	gold quality
testis	UBERON:0000473	75.07	gold quality
colonic epithelium	UBERON:0000397	67.88	silver quality
calcaneal tendon	UBERON:0003701	58.99	gold quality
hindlimb stylopod muscle	UBERON:0004252	56.73	silver quality
gall bladder	UBERON:0002110	55.18	gold quality
sperm	CL:0000019	54.95	gold quality
prefrontal cortex	UBERON:0000451	53.80	gold quality
buccal mucosa cell	CL:0002336	53.46	gold quality
upper leg skin	UBERON:0004262	52.87	silver quality
tendon	UBERON:0000043	51.99	gold quality
monocyte	CL:0000576	50.99	silver quality
left coronary artery	UBERON:0001626	50.71	gold quality
muscle of leg	UBERON:0001383	49.95	gold quality
descending thoracic aorta	UBERON:0002345	49.95	gold quality
coronary artery	UBERON:0001621	49.77	gold quality
smooth muscle tissue	UBERON:0001135	49.75	gold quality
tibial artery	UBERON:0007610	49.72	gold quality
popliteal artery	UBERON:0002250	49.68	gold quality
aorta	UBERON:0000947	49.26	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	49.23	gold quality
lymph node	UBERON:0000029	49.16	gold quality
subcutaneous adipose tissue	UBERON:0002190	49.02	gold quality
right coronary artery	UBERON:0001625	48.96	gold quality
tibial nerve	UBERON:0001323	48.94	gold quality
thoracic aorta	UBERON:0001515	48.88	gold quality
ascending aorta	UBERON:0001496	48.73	gold quality
right ovary	UBERON:0002118	48.70	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.64

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• Results confirmed the association of rs1870634 in LINC00841 with coronary artery disease susceptibility in an Iranian population. (PMID:29654577)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.