LINC00862

Summary

LINC00862 (long intergenic non-protein coding RNA 862, HGNC:21901) is a long non-coding RNA gene on chromosome 1q32.1.

Predicted to be located in membrane.

Source: NCBI Gene 554279 — RefSeq curated summary.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:21901
Approved symbol	LINC00862
Name	long intergenic non-protein coding RNA 862
Location	1q32.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000203721
Ensembl biotype	lncRNA
Entrez	554279
RNAcentral	URS000075D6D3 — lncRNA, 1445 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 33 — 33 lncRNA

ENST00000367355, ENST00000367356, ENST00000636153, ENST00000637098, ENST00000656731, ENST00000669359, ENST00000669708, ENST00000688178, ENST00000760608, ENST00000760609, ENST00000760610, ENST00000760611, ENST00000760612, ENST00000760613, ENST00000760614, ENST00000760615, ENST00000760616, ENST00000760617, ENST00000760618, ENST00000760619, ENST00000760620, ENST00000760621, ENST00000760622, ENST00000760623, ENST00000760624, ENST00000760625, ENST00000760626, ENST00000760627, ENST00000760628, ENST00000760629, ENST00000760630, ENST00000760631, ENST00000760632

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000367355 — 5 exons

Exon	Start	End
ENSE00001444306	200342541	200343410
ENSE00001444307	200368665	200368871
ENSE00001444308	200371046	200371165
ENSE00003701975	200373093	200373169
ENSE00004114405	200373647	200373840

Expression profiles

Bgee: expression breadth ubiquitous, 144 present calls, max score 76.07.

FANTOM5 (CAGE): breadth broad, TPM avg 0.6195 / max 52.5756, expressed in 214 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
16569	0.4930	146
16568	0.1265	60

Top tissues by expression

232 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	76.07	gold quality
right lobe of liver	UBERON:0001114	70.26	gold quality
stromal cell of endometrium	CL:0002255	66.32	gold quality
sural nerve	UBERON:0015488	65.44	gold quality
blood	UBERON:0000178	64.23	gold quality
sperm	CL:0000019	61.90	gold quality
corpus callosum	UBERON:0002336	61.64	gold quality
liver	UBERON:0002107	61.20	gold quality
buccal mucosa cell	CL:0002336	60.88	gold quality
ganglionic eminence	UBERON:0004023	58.94	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	58.46	gold quality
cortical plate	UBERON:0005343	58.29	silver quality
spinal cord	UBERON:0002240	56.80	gold quality
spleen	UBERON:0002106	55.30	gold quality
putamen	UBERON:0001874	54.22	gold quality
prefrontal cortex	UBERON:0000451	53.48	gold quality
monocyte	CL:0000576	53.38	silver quality
mucosa of transverse colon	UBERON:0004991	53.30	gold quality
substantia nigra	UBERON:0002038	53.02	gold quality
tonsil	UBERON:0002372	53.02	gold quality
gall bladder	UBERON:0002110	52.83	gold quality
amygdala	UBERON:0001876	52.79	gold quality
body of pancreas	UBERON:0001150	52.14	gold quality
calcaneal tendon	UBERON:0003701	52.13	silver quality
caudate nucleus	UBERON:0001873	52.11	gold quality
right lung	UBERON:0002167	52.07	gold quality
lymph node	UBERON:0000029	51.88	gold quality
muscle of leg	UBERON:0001383	51.71	gold quality
minor salivary gland	UBERON:0001830	51.52	gold quality
pancreas	UBERON:0001264	51.42	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.