LINC00865

Summary

LINC00865 (long intergenic non-protein coding RNA 865, HGNC:45170) is a long non-coding RNA gene on chromosome 10q23.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:45170
Approved symbol	LINC00865
Name	long intergenic non-protein coding RNA 865
Location	10q23.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232229
Ensembl biotype	lncRNA
Entrez	643529
RNAcentral	URS000075A40C — lncRNA, 4309 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 19 — 19 lncRNA

ENST00000448490, ENST00000448963, ENST00000629067, ENST00000664430, ENST00000667153, ENST00000670043, ENST00000686130, ENST00000692187, ENST00000715760, ENST00000749371, ENST00000749372, ENST00000749373, ENST00000749374, ENST00000749375, ENST00000749376, ENST00000749377, ENST00000749378, ENST00000749379, ENST00000749380

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000448490 — 3 exons

Exon	Start	End
ENSE00001682440	89837218	89840861
ENSE00001698959	89835201	89835257
ENSE00001780082	89829556	89829745

Expression profiles

Bgee: expression breadth ubiquitous, 197 present calls, max score 90.12.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0225 / max 23.0053, expressed in 3 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
106161	0.0106	3
106163	0.0060	3
106162	0.0059	3

Top tissues by expression

240 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
pancreatic ductal cell	CL:0002079	90.12	gold quality
urinary bladder	UBERON:0001255	86.63	gold quality
sperm	CL:0000019	86.32	gold quality
cortical plate	UBERON:0005343	85.66	gold quality
left testis	UBERON:0004533	83.99	gold quality
right testis	UBERON:0004534	83.96	gold quality
testis	UBERON:0000473	83.75	gold quality
ganglionic eminence	UBERON:0004023	83.58	gold quality
epithelial cell of pancreas	CL:0000083	83.51	silver quality
Brodmann (1909) area 23	UBERON:0013554	81.82	gold quality
oviduct epithelium	UBERON:0004804	81.18	gold quality
adult organism	UBERON:0007023	80.21	gold quality
mucosa of stomach	UBERON:0001199	80.01	gold quality
tibialis anterior	UBERON:0001385	78.54	gold quality
ventricular zone	UBERON:0003053	78.02	gold quality
ileal mucosa	UBERON:0000331	77.75	gold quality
bronchial epithelial cell	CL:0002328	77.00	gold quality
middle temporal gyrus	UBERON:0002771	76.87	gold quality
bronchus	UBERON:0002185	76.34	gold quality
thymus	UBERON:0002370	75.78	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	75.16	gold quality
primary visual cortex	UBERON:0002436	73.65	gold quality
right lobe of thyroid gland	UBERON:0001119	73.55	gold quality
prostate gland	UBERON:0002367	73.30	gold quality
endometrium	UBERON:0001295	73.21	gold quality
fundus of stomach	UBERON:0001160	72.93	gold quality
endothelial cell	CL:0000115	72.83	silver quality
thyroid gland	UBERON:0002046	72.72	gold quality
left lobe of thyroid gland	UBERON:0001120	72.56	gold quality
occipital lobe	UBERON:0002021	71.10	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.84

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.