LINC00868

Summary

LINC00868 (long intergenic non-protein coding RNA 868, HGNC:27562) is a long non-coding RNA gene on chromosome 17q25.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27562
Approved symbol	LINC00868
Name	long intergenic non-protein coding RNA 868
Location	17q25.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000267535
Ensembl biotype	lncRNA
Entrez	283994
RNAcentral	URS0000A76558 — lncRNA, 549 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000589708, ENST00000589914, ENST00000592919, ENST00000664044, ENST00000670268

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000589708 — 3 exons

Exon	Start	End
ENSE00002804291	76861476	76861834
ENSE00002854928	76858267	76858355
ENSE00002914252	76856166	76856264

Expression profiles

Bgee: expression breadth ubiquitous, 137 present calls, max score 82.74.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0115 / max 4.8218, expressed in 6 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
162908	0.0115	6

Top tissues by expression

230 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.74	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.76	gold quality
oocyte	CL:0000023	71.13	gold quality
myocardium	UBERON:0002349	70.66	gold quality
secondary oocyte	CL:0000655	68.83	gold quality
ventricular zone	UBERON:0003053	68.15	gold quality
vastus lateralis	UBERON:0001379	66.33	gold quality
quadriceps femoris	UBERON:0001377	65.76	gold quality
sperm	CL:0000019	65.74	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	65.11	gold quality
biceps brachii	UBERON:0001507	64.05	gold quality
heart right ventricle	UBERON:0002080	63.81	gold quality
skeletal muscle tissue	UBERON:0001134	63.59	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	63.01	gold quality
sural nerve	UBERON:0015488	62.79	silver quality
right testis	UBERON:0004534	62.27	gold quality
parotid gland	UBERON:0001831	61.92	gold quality
calcaneal tendon	UBERON:0003701	61.76	gold quality
left testis	UBERON:0004533	61.68	gold quality
decidua	UBERON:0002450	61.43	gold quality
testis	UBERON:0000473	60.91	gold quality
superficial temporal artery	UBERON:0001614	60.19	gold quality
gingival epithelium	UBERON:0001949	59.82	gold quality
trabecular bone tissue	UBERON:0002483	59.74	gold quality
transverse colon	UBERON:0001157	59.55	gold quality
gingiva	UBERON:0001828	59.07	gold quality
cartilage tissue	UBERON:0002418	59.00	gold quality
nasal cavity epithelium	UBERON:0005384	58.91	gold quality
monocyte	CL:0000576	58.53	gold quality
Brodmann (1909) area 23	UBERON:0013554	58.27	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.