LINC00871

Summary

LINC00871 (long intergenic non-protein coding RNA 871, HGNC:47038) is a long non-coding RNA gene on chromosome 14q21.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:47038
Approved symbol	LINC00871
Name	long intergenic non-protein coding RNA 871
Location	14q21.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	RP11-1A16.1
Ensembl gene	ENSG00000258700
Ensembl biotype	lncRNA
Entrez	100506412
RNAcentral	URS000075C738 — lncRNA, 846 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000555246, ENST00000556071, ENST00000556869, ENST00000556886, ENST00000656720, ENST00000659741, ENST00000664642, ENST00000666179, ENST00000761148, ENST00000761149, ENST00000779735, ENST00000779736, ENST00000779737, ENST00000779738, ENST00000779739, ENST00000779740, ENST00000779741

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000555246 — 6 exons

Exon	Start	End
ENSE00002470292	46211747	46211804
ENSE00002490388	46318813	46318861
ENSE00002505440	46447309	46447375
ENSE00002513171	46210824	46210939
ENSE00002520194	46446185	46446226
ENSE00002522440	45940943	45941018

Expression profiles

Bgee: expression breadth ubiquitous, 113 present calls, max score 82.92.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0282 / max 11.7314, expressed in 9 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
139416	0.0282	9

Top tissues by expression

113 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.92	gold quality
cortex of kidney	UBERON:0001225	72.28	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.23	gold quality
rectum	UBERON:0001052	70.84	gold quality
metanephros cortex	UBERON:0010533	69.70	gold quality
mucosa of transverse colon	UBERON:0004991	68.73	gold quality
kidney	UBERON:0002113	68.63	gold quality
transverse colon	UBERON:0001157	68.51	gold quality
cortical plate	UBERON:0005343	67.55	gold quality
adult mammalian kidney	UBERON:0000082	67.31	gold quality
ganglionic eminence	UBERON:0004023	65.96	gold quality
right uterine tube	UBERON:0001302	64.46	gold quality
colon	UBERON:0001155	62.09	gold quality
fallopian tube	UBERON:0003889	59.82	gold quality
smooth muscle tissue	UBERON:0001135	58.86	gold quality
intestine	UBERON:0000160	58.48	gold quality
endometrium	UBERON:0001295	58.34	gold quality
stromal cell of endometrium	CL:0002255	58.17	gold quality
bone marrow	UBERON:0002371	56.71	gold quality
placenta	UBERON:0001987	56.28	gold quality
descending thoracic aorta	UBERON:0002345	56.08	gold quality
calcaneal tendon	UBERON:0003701	55.38	gold quality
lymph node	UBERON:0000029	55.09	gold quality
blood	UBERON:0000178	54.86	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	54.77	gold quality
superior frontal gyrus	UBERON:0002661	54.72	gold quality
monocyte	CL:0000576	54.13	gold quality
prefrontal cortex	UBERON:0000451	53.65	gold quality
liver	UBERON:0002107	53.25	gold quality
islet of Langerhans	UBERON:0000006	52.91	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-CURD-119	yes	59.94
E-ANND-3	yes	2.74

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.