LINC00892

Summary

LINC00892 (long intergenic non-protein coding RNA 892, HGNC:48578) is a long non-coding RNA gene on chromosome Xq26.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48578
Approved symbol	LINC00892
Name	long intergenic non-protein coding RNA 892
Location	Xq26.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233093
Ensembl biotype	lncRNA
Entrez	100128420
RNAcentral	URS000075A10E — lncRNA, 701 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 4 lncRNA, 1 retained_intron

ENST00000427517, ENST00000429841, ENST00000454385, ENST00000656219, ENST00000782377

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000427517 — 2 exons

Exon	Start	End
ENSE00001612107	136639740	136639804
ENSE00001690499	136640774	136642429

Expression profiles

Bgee: expression breadth ubiquitous, 143 present calls, max score 87.17.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.9448 / max 137.9948, expressed in 92 samples.

FANTOM5 promoters (6 alternative TSS)

Promoter ID	TPM avg	Samples expressed
197718	0.2370	52
197719	0.2286	48
197720	0.1736	36
197717	0.1549	32
197715	0.1113	30
197716	0.0394	17

Top tissues by expression

234 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
granulocyte	CL:0000094	87.17	gold quality
leukocyte	CL:0000738	75.21	gold quality
monocyte	CL:0000576	74.51	gold quality
mucosa of transverse colon	UBERON:0004991	70.19	gold quality
lymph node	UBERON:0000029	69.93	gold quality
bone marrow cell	CL:0002092	68.30	silver quality
vermiform appendix	UBERON:0001154	67.17	gold quality
spleen	UBERON:0002106	65.50	gold quality
rectum	UBERON:0001052	63.31	gold quality
cortical plate	UBERON:0005343	62.38	gold quality
gall bladder	UBERON:0002110	61.47	gold quality
caecum	UBERON:0001153	61.33	gold quality
small intestine Peyer’s patch	UBERON:0003454	60.21	gold quality
sural nerve	UBERON:0015488	59.90	silver quality
calcaneal tendon	UBERON:0003701	59.68	gold quality
small intestine	UBERON:0002108	59.38	gold quality
blood	UBERON:0000178	59.32	gold quality
right coronary artery	UBERON:0001625	58.04	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	56.63	gold quality
prefrontal cortex	UBERON:0000451	55.25	gold quality
right lobe of liver	UBERON:0001114	55.05	gold quality
tonsil	UBERON:0002372	54.36	gold quality
smooth muscle tissue	UBERON:0001135	53.80	gold quality
hindlimb stylopod muscle	UBERON:0004252	53.54	gold quality
omental fat pad	UBERON:0010414	53.48	gold quality
upper lobe of left lung	UBERON:0008952	53.45	gold quality
peritoneum	UBERON:0002358	53.44	gold quality
esophagus mucosa	UBERON:0002469	52.69	gold quality
adipose tissue of abdominal region	UBERON:0007808	52.68	gold quality
intestine	UBERON:0000160	52.47	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.42

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.