LINC00896

Summary

LINC00896 (long intergenic non-protein coding RNA 896, HGNC:26519) is a long non-coding RNA gene on chromosome 22q11.21.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:26519
Approved symbol	LINC00896
Name	long intergenic non-protein coding RNA 896
Location	22q11.21
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ32575
Ensembl gene	ENSG00000236499
Ensembl biotype	lncRNA
Entrez	150197
RNAcentral	URS000075D388 — lncRNA, 2206 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 13 — 13 lncRNA

ENST00000609602, ENST00000823995, ENST00000823996, ENST00000823997, ENST00000823998, ENST00000823999, ENST00000824000, ENST00000824001, ENST00000824002, ENST00000824003, ENST00000824004, ENST00000824005, ENST00000824006

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000609602 — 1 exons

Exon	Start	End
ENSE00004232855	20206340	20208524

Expression profiles

Bgee: expression breadth ubiquitous, 126 present calls, max score 71.84.

FANTOM5 (CAGE): breadth broad, TPM avg 0.8434 / max 32.8607, expressed in 345 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
191120	0.8434	345

Top tissues by expression

218 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right lobe of thyroid gland	UBERON:0001119	71.84	gold quality
sural nerve	UBERON:0015488	71.84	silver quality
left lobe of thyroid gland	UBERON:0001120	69.27	gold quality
thyroid gland	UBERON:0002046	68.51	gold quality
adenohypophysis	UBERON:0002196	66.45	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	66.25	gold quality
pituitary gland	UBERON:0000007	65.24	gold quality
epithelium of nasopharynx	UBERON:0001951	65.02	gold quality
lower lobe of lung	UBERON:0008949	64.72	silver quality
right lobe of liver	UBERON:0001114	62.26	gold quality
mucosa of transverse colon	UBERON:0004991	59.87	gold quality
vena cava	UBERON:0004087	59.04	gold quality
sperm	CL:0000019	58.90	gold quality
fundus of stomach	UBERON:0001160	58.63	gold quality
myocardium	UBERON:0002349	58.50	gold quality
bone marrow	UBERON:0002371	57.35	gold quality
ganglionic eminence	UBERON:0004023	57.02	silver quality
gingival epithelium	UBERON:0001949	56.94	gold quality
parotid gland	UBERON:0001831	56.44	gold quality
endothelial cell	CL:0000115	56.41	gold quality
body of stomach	UBERON:0001161	56.11	gold quality
stomach	UBERON:0000945	55.92	gold quality
trigeminal ganglion	UBERON:0001675	55.81	gold quality
liver	UBERON:0002107	55.70	gold quality
body of pancreas	UBERON:0001150	55.66	gold quality
esophagus squamous epithelium	UBERON:0006920	55.61	gold quality
ventral tegmental area	UBERON:0002691	55.55	gold quality
substantia nigra pars compacta	UBERON:0001965	55.50	gold quality
tongue	UBERON:0001723	55.48	gold quality
lateral nuclear group of thalamus	UBERON:0002736	55.32	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.86

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.