LINC00898

Summary

LINC00898 (long intergenic non-protein coding RNA 898, HGNC:48581) is a long non-coding RNA gene on chromosome 22q13.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48581
Approved symbol	LINC00898
Name	long intergenic non-protein coding RNA 898
Location	22q13.31
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000205634
Ensembl biotype	lncRNA
Entrez	400932
RNAcentral	URS00004D1960 — lncRNA, 4185 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 6 — 6 lncRNA

ENST00000380990, ENST00000609786, ENST00000610069, ENST00000660125, ENST00000669762, ENST00000809349

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000380990 — 6 exons

Exon	Start	End
ENSE00001487124	47621043	47621101
ENSE00001487125	47622456	47622952
ENSE00001487126	47624468	47625633
ENSE00001487128	47627162	47627242
ENSE00001487130	47627438	47627577
ENSE00001487135	47629328	47631569

Expression profiles

Bgee: expression breadth broad, 31 present calls, max score 59.40.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.1406 / max 17.5923, expressed in 61 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
194633	0.0836	41
194632	0.0570	32

Top tissues by expression

31 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
prefrontal cortex	UBERON:0000451	59.40	gold quality
superior frontal gyrus	UBERON:0002661	57.28	gold quality
frontal cortex	UBERON:0001870	56.42	gold quality
primary visual cortex	UBERON:0002436	55.83	gold quality
right testis	UBERON:0004534	55.45	gold quality
monocyte	CL:0000576	55.32	gold quality
testis	UBERON:0000473	54.90	gold quality
left testis	UBERON:0004533	54.85	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	54.02	silver quality
cerebral cortex	UBERON:0000956	53.79	gold quality
brain	UBERON:0000955	53.67	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	53.28	gold quality
Brodmann (1909) area 9	UBERON:0013540	52.45	gold quality
right frontal lobe	UBERON:0002810	52.23	gold quality
multicellular organism	UBERON:0000468	51.64	gold quality
Ammon’s horn	UBERON:0001954	50.40	gold quality
right hemisphere of cerebellum	UBERON:0014890	49.62	gold quality
cerebellar hemisphere	UBERON:0002245	49.21	gold quality
gastrocnemius	UBERON:0001388	49.01	gold quality
blood	UBERON:0000178	48.19	gold quality
caudate nucleus	UBERON:0001873	47.36	gold quality
anterior cingulate cortex	UBERON:0009835	45.31	gold quality
temporal lobe	UBERON:0001871	45.04	silver quality
subcutaneous adipose tissue	UBERON:0002190	43.65	gold quality
heart left ventricle	UBERON:0002084	42.75	silver quality
substantia nigra	UBERON:0002038	42.74	gold quality
skin of leg	UBERON:0001511	41.96	silver quality
zone of skin	UBERON:0000014	41.91	silver quality
skin of abdomen	UBERON:0001416	39.82	silver quality
amygdala	UBERON:0001876	39.06	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.97

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.