LINC00901

Summary

LINC00901 (long intergenic non-protein coding RNA 901, HGNC:40352) is a long non-coding RNA gene on chromosome 3q13.31.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:40352
Approved symbol	LINC00901
Name	long intergenic non-protein coding RNA 901
Location	3q13.31
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00005428, BC040587
Ensembl gene	ENSG00000242385
Ensembl biotype	lncRNA
Entrez	100506724
RNAcentral	URS00000D505B — lncRNA, 1452 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000487512, ENST00000841221

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000487512 — 2 exons

Exon	Start	End
ENSE00001897907	116921431	116921560
ENSE00001934733	116930917	116932238

Expression profiles

Bgee: expression breadth broad, 25 present calls, max score 97.13.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0236 / max 21.6521, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
38059	0.0236	3

Top tissues by expression

161 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	97.13	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.03	gold quality
right testis	UBERON:0004534	72.89	gold quality
left testis	UBERON:0004533	72.28	gold quality
testis	UBERON:0000473	70.17	gold quality
gastrocnemius	UBERON:0001388	55.50	gold quality
corpus callosum	UBERON:0002336	54.19	gold quality
adrenal tissue	UBERON:0018303	53.93	gold quality
monocyte	CL:0000576	51.35	gold quality
uterine cervix	UBERON:0000002	48.20	gold quality
stomach	UBERON:0000945	47.56	gold quality
adrenal gland	UBERON:0002369	46.77	gold quality
skin of leg	UBERON:0001511	46.62	gold quality
tibial nerve	UBERON:0001323	45.92	gold quality
prefrontal cortex	UBERON:0000451	45.24	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	45.15	silver quality
anatomical system	UBERON:0000467	44.57	gold quality
material anatomical entity	UBERON:0000465	44.36	gold quality
cauda epididymis	UBERON:0004360	44.27	silver quality
multicellular organism	UBERON:0000468	44.23	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
skin of hip	UBERON:0001554	42.61	silver quality
secondary oocyte	CL:0000655	42.57	gold quality
blood	UBERON:0000178	42.04	gold quality
heart left ventricle	UBERON:0002084	41.97	gold quality
left adrenal gland cortex	UBERON:0035825	41.78	silver quality
vastus lateralis	UBERON:0001379	41.41	gold quality
quadriceps femoris	UBERON:0001377	41.37	gold quality
adult mammalian kidney	UBERON:0000082	41.34	gold quality
superficial temporal artery	UBERON:0001614	41.33	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.13

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.