LINC00904

Summary

LINC00904 (long intergenic non-protein coding RNA 904, HGNC:44325) is a long non-coding RNA gene on chromosome 19q13.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:44325
Approved symbol	LINC00904
Name	long intergenic non-protein coding RNA 904
Location	19q13.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000271171
Ensembl biotype	lncRNA
Entrez	100652909
RNAcentral	URS00026A24FF — lncRNA, 1630 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000603717, ENST00000604453, ENST00000605047, ENST00000651304, ENST00000653476, ENST00000657508, ENST00000657878, ENST00000658624, ENST00000659576, ENST00000662155, ENST00000665539, ENST00000667778, ENST00000667951, ENST00000668349

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000603717 — 4 exons

Exon	Start	End
ENSE00003534294	34902965	34903083
ENSE00003687097	34902202	34902479
ENSE00003846165	34904151	34904752
ENSE00003876229	34904961	34905096

Expression profiles

Bgee: expression breadth ubiquitous, 124 present calls, max score 79.84.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0041 / max 4.0598, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
180460	0.0041	3

Top tissues by expression

124 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.84	silver quality
testis	UBERON:0000473	73.39	gold quality
left testis	UBERON:0004533	73.23	gold quality
right testis	UBERON:0004534	72.31	gold quality
cortical plate	UBERON:0005343	64.72	gold quality
sural nerve	UBERON:0015488	62.39	gold quality
ganglionic eminence	UBERON:0004023	60.93	gold quality
ventricular zone	UBERON:0003053	60.16	gold quality
calcaneal tendon	UBERON:0003701	59.93	gold quality
skeletal muscle tissue	UBERON:0001134	59.44	gold quality
bone marrow	UBERON:0002371	56.07	gold quality
hindlimb stylopod muscle	UBERON:0004252	54.28	gold quality
right uterine tube	UBERON:0001302	53.83	gold quality
prefrontal cortex	UBERON:0000451	52.61	gold quality
stromal cell of endometrium	CL:0002255	52.08	silver quality
blood	UBERON:0000178	52.00	gold quality
muscle of leg	UBERON:0001383	51.20	gold quality
superior frontal gyrus	UBERON:0002661	51.01	gold quality
lower esophagus mucosa	UBERON:0035834	50.85	gold quality
monocyte	CL:0000576	50.76	silver quality
lymph node	UBERON:0000029	50.65	silver quality
islet of Langerhans	UBERON:0000006	50.50	gold quality
right adrenal gland cortex	UBERON:0035827	50.39	gold quality
liver	UBERON:0002107	50.21	silver quality
right lung	UBERON:0002167	49.98	gold quality
apex of heart	UBERON:0002098	49.82	gold quality
gastrocnemius	UBERON:0001388	49.75	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	49.48	gold quality
duodenum	UBERON:0002114	49.40	gold quality
gall bladder	UBERON:0002110	49.18	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.11

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.