LINC00905

Summary

LINC00905 (long intergenic non-protein coding RNA 905, HGNC:26334) is a long non-coding RNA gene on chromosome 19p13.12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:26334
Approved symbol	LINC00905
Name	long intergenic non-protein coding RNA 905
Location	19p13.12
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ25328
Ensembl gene	ENSG00000167459
Ensembl biotype	lncRNA
Entrez	148231
RNAcentral	URS000075D91B — lncRNA, 1728 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 48 — 47 lncRNA, 1 retained_intron

ENST00000397365, ENST00000588117, ENST00000588838, ENST00000589071, ENST00000602372, ENST00000602744, ENST00000602814, ENST00000654054, ENST00000654066, ENST00000654208, ENST00000654675, ENST00000654929, ENST00000655400, ENST00000656142, ENST00000657571, ENST00000658008, ENST00000658373, ENST00000658675, ENST00000659441, ENST00000659686, ENST00000661797, ENST00000662032, ENST00000662052, ENST00000662221, ENST00000662251, ENST00000662482, ENST00000662714, ENST00000662860, ENST00000664035, ENST00000664254, ENST00000665134, ENST00000666507, ENST00000667744, ENST00000668027, ENST00000669042, ENST00000669672, ENST00000669964, ENST00000671363, ENST00000715794, ENST00000715795, ENST00000715802, ENST00000715803, ENST00000715804, ENST00000737019, ENST00000737020, ENST00000737021, ENST00000737022, ENST00000737023

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000397365 — 3 exons

Exon	Start	End
ENSE00002833780	16034741	16035012
ENSE00003236518	16035471	16035627
ENSE00003406764	16033317	16033353

Expression profiles

Bgee: expression breadth broad, 54 present calls, max score 86.33.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0570 / max 51.4237, expressed in 3 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
174360	0.0395	3
174358	0.0100	3
174359	0.0050	3
174357	0.0025	2

Top tissues by expression

165 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	86.33	silver quality
right testis	UBERON:0004534	85.82	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.76	gold quality
left testis	UBERON:0004533	85.62	gold quality
testis	UBERON:0000473	83.32	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	74.73	gold quality
adult organism	UBERON:0007023	63.84	silver quality
colonic epithelium	UBERON:0000397	63.37	silver quality
secondary oocyte	CL:0000655	62.58	gold quality
oocyte	CL:0000023	59.99	gold quality
monocyte	CL:0000576	56.67	gold quality
buccal mucosa cell	CL:0002336	55.30	gold quality
sural nerve	UBERON:0015488	52.55	silver quality
amniotic fluid	UBERON:0000173	51.50	gold quality
gastrocnemius	UBERON:0001388	50.13	gold quality
duodenum	UBERON:0002114	49.81	gold quality
islet of Langerhans	UBERON:0000006	48.42	silver quality
right lobe of liver	UBERON:0001114	47.21	silver quality
body of pancreas	UBERON:0001150	47.20	silver quality
upper leg skin	UBERON:0004262	46.50	silver quality
anatomical system	UBERON:0000467	45.87	gold quality
material anatomical entity	UBERON:0000465	45.71	gold quality
multicellular organism	UBERON:0000468	45.61	gold quality
tibial nerve	UBERON:0001323	45.10	gold quality
pancreas	UBERON:0001264	44.81	silver quality
tibial artery	UBERON:0007610	44.49	silver quality
left coronary artery	UBERON:0001626	44.42	gold quality
caecum	UBERON:0001153	43.96	gold quality
minor salivary gland	UBERON:0001830	43.83	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.81

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.