LINC00906

Summary

LINC00906 (long intergenic non-protein coding RNA 906, HGNC:27121) is a long non-coding RNA gene on chromosome 19q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27121
Approved symbol	LINC00906
Name	long intergenic non-protein coding RNA 906
Location	19q12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000267339
Ensembl biotype	lncRNA
Entrez	148145
RNAcentral	URS000045DF44 — lncRNA, 3444 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 38 — 38 lncRNA

ENST00000585813, ENST00000587850, ENST00000587998, ENST00000588609, ENST00000589466, ENST00000589623, ENST00000589921, ENST00000591285, ENST00000651179, ENST00000654199, ENST00000657694, ENST00000657984, ENST00000659282, ENST00000660056, ENST00000660607, ENST00000663381, ENST00000664282, ENST00000664775, ENST00000667314, ENST00000669456, ENST00000670182, ENST00000670624, ENST00000686107, ENST00000690589, ENST00000691008, ENST00000692277, ENST00000716100, ENST00000716101, ENST00000716102, ENST00000716103, ENST00000716104, ENST00000716105, ENST00000716106, ENST00000716107, ENST00000716108, ENST00000716109, ENST00000716110, ENST00000716111

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000585813 — 4 exons

Exon	Start	End
ENSE00003848574	28967805	28969042
ENSE00003856887	28966240	28966472
ENSE00003858837	28970201	28970670
ENSE00004028858	28969672	28969839

Expression profiles

Bgee: expression breadth ubiquitous, 119 present calls, max score 90.64.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.6882 / max 108.5483, expressed in 181 samples.

FANTOM5 promoters (5 alternative TSS)

Promoter ID	TPM avg	Samples expressed
174985	0.4289	138
174986	0.2033	81
174984	0.0458	20
174988	0.0055	3
174987	0.0047	3

Top tissues by expression

218 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	90.64	gold quality
sural nerve	UBERON:0015488	80.55	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.44	gold quality
bone marrow cell	CL:0002092	76.78	gold quality
right testis	UBERON:0004534	75.63	gold quality
left testis	UBERON:0004533	75.04	gold quality
testis	UBERON:0000473	72.86	gold quality
myocardium	UBERON:0002349	66.62	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	63.48	gold quality
hindlimb stylopod muscle	UBERON:0004252	63.25	gold quality
apex of heart	UBERON:0002098	61.68	gold quality
ventricular zone	UBERON:0003053	60.25	gold quality
endocervix	UBERON:0000458	59.95	gold quality
heart left ventricle	UBERON:0002084	59.77	gold quality
cardiac ventricle	UBERON:0002082	59.39	gold quality
smooth muscle tissue	UBERON:0001135	59.06	gold quality
ectocervix	UBERON:0012249	59.02	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	58.98	gold quality
bone marrow	UBERON:0002371	58.53	gold quality
heart	UBERON:0000948	58.08	gold quality
substantia nigra	UBERON:0002038	57.98	gold quality
uterine cervix	UBERON:0000002	57.57	gold quality
spinal cord	UBERON:0002240	57.30	gold quality
cartilage tissue	UBERON:0002418	57.27	gold quality
vena cava	UBERON:0004087	57.19	gold quality
gall bladder	UBERON:0002110	57.04	gold quality
trabecular bone tissue	UBERON:0002483	56.55	gold quality
putamen	UBERON:0001874	56.01	gold quality
right atrium auricular region	UBERON:0006631	55.97	gold quality
midbrain	UBERON:0001891	55.91	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.91

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.