LINC00917

Summary

LINC00917 (long intergenic non-protein coding RNA 917, HGNC:48607) is a long non-coding RNA gene on chromosome 16q24.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48607
Approved symbol	LINC00917
Name	long intergenic non-protein coding RNA 917
Location	16q24.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000168367
Ensembl biotype	lncRNA
Entrez	732275
RNAcentral	URS000039EF57 — lncRNA, 2618 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 24 — 24 lncRNA

ENST00000594203, ENST00000595169, ENST00000598994, ENST00000599619, ENST00000599664, ENST00000600892, ENST00000601556, ENST00000651755, ENST00000654235, ENST00000655731, ENST00000655979, ENST00000656382, ENST00000656700, ENST00000660779, ENST00000664042, ENST00000669859, ENST00000670118, ENST00000822057, ENST00000822058, ENST00000822059, ENST00000822060, ENST00000822061, ENST00000822062, ENST00000822063

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000594203 — 6 exons

Exon	Start	End
ENSE00001530901	86338750	86338832
ENSE00003011226	86337361	86338661
ENSE00003083074	86345492	86345644
ENSE00003119080	86333688	86333907
ENSE00003142920	86331844	86332678
ENSE00003172821	86332959	86333044

Expression profiles

Bgee: expression breadth broad, 67 present calls, max score 97.62.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0199 / max 22.1032, expressed in 3 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
158435	0.0101	3
158436	0.0097	3

Top tissues by expression

178 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	97.62	gold quality
left testis	UBERON:0004533	95.62	gold quality
right testis	UBERON:0004534	95.44	gold quality
testis	UBERON:0000473	92.05	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.95	gold quality
tibialis anterior	UBERON:0001385	63.89	silver quality
ileal mucosa	UBERON:0000331	61.17	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	60.90	gold quality
adult organism	UBERON:0007023	57.48	gold quality
pancreatic ductal cell	CL:0002079	57.15	silver quality
deltoid	UBERON:0001476	55.25	gold quality
cardiac muscle of right atrium	UBERON:0003379	54.34	gold quality
epithelial cell of pancreas	CL:0000083	54.30	gold quality
left ventricle myocardium	UBERON:0006566	54.23	gold quality
kidney epithelium	UBERON:0004819	53.93	gold quality
upper arm skin	UBERON:0004263	53.52	gold quality
mucosa of stomach	UBERON:0001199	53.42	gold quality
sural nerve	UBERON:0015488	53.30	silver quality
monocyte	CL:0000576	51.08	silver quality
right hemisphere of cerebellum	UBERON:0014890	50.81	gold quality
myocardium	UBERON:0002349	50.25	gold quality
left lobe of thyroid gland	UBERON:0001120	49.82	gold quality
gastrocnemius	UBERON:0001388	48.86	gold quality
cerebellar hemisphere	UBERON:0002245	48.79	gold quality
tibial nerve	UBERON:0001323	47.70	gold quality
middle temporal gyrus	UBERON:0002771	47.70	gold quality
quadriceps femoris	UBERON:0001377	47.51	gold quality
nasal cavity epithelium	UBERON:0005384	47.03	gold quality
pancreas	UBERON:0001264	46.95	silver quality
body of pancreas	UBERON:0001150	46.85	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.46

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.