LINC00924

Summary

LINC00924 (long intergenic non-protein coding RNA 924, HGNC:27081) is a long non-coding RNA gene on chromosome 15q26.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27081
Approved symbol	LINC00924
Name	long intergenic non-protein coding RNA 924
Location	15q26.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000259134
Ensembl biotype	lncRNA
Entrez	145820
RNAcentral	URS0000759C1D — lncRNA, 2684 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 76 — 76 lncRNA

ENST00000554837, ENST00000556053, ENST00000650234, ENST00000653141, ENST00000655842, ENST00000663815, ENST00000670891, ENST00000840535, ENST00000840536, ENST00000840537, ENST00000840538, ENST00000840539, ENST00000840540, ENST00000840541, ENST00000840542, ENST00000840543, ENST00000840544, ENST00000840545, ENST00000840546, ENST00000840547, ENST00000840548, ENST00000840549, ENST00000840550, ENST00000840551, ENST00000840552, ENST00000840553, ENST00000840554, ENST00000840555, ENST00000840556, ENST00000840557, ENST00000840558, ENST00000840559, ENST00000840560, ENST00000840561, ENST00000840562, ENST00000840563, ENST00000840564, ENST00000840565, ENST00000840566, ENST00000840567, ENST00000840568, ENST00000840569, ENST00000840570, ENST00000840571, ENST00000840572, ENST00000840573, ENST00000840574, ENST00000840575, ENST00000840576, ENST00000840577, ENST00000840578, ENST00000840579, ENST00000840580, ENST00000840581, ENST00000840582, ENST00000840583, ENST00000840584, ENST00000840585, ENST00000840586, ENST00000840587, ENST00000840588, ENST00000840589, ENST00000840590, ENST00000840591, ENST00000840592, ENST00000840593, ENST00000840594, ENST00000840595, ENST00000840596, ENST00000840597, ENST00000840598, ENST00000840599, ENST00000840600, ENST00000840601, ENST00000840602, ENST00000840603

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000554837 — 6 exons

Exon	Start	End
ENSE00002441505	95453764	95453873
ENSE00002441864	95506054	95506114
ENSE00002453473	95433095	95433179
ENSE00002471592	95497681	95498000
ENSE00002507156	95451795	95451936
ENSE00002512065	95501508	95501651

Expression profiles

Bgee: expression breadth ubiquitous, 161 present calls, max score 84.95.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.2470 / max 37.0370, expressed in 116 samples.

FANTOM5 promoters (9 alternative TSS)

Promoter ID	TPM avg	Samples expressed
148696	0.0718	40
148702	0.0378	20
148703	0.0279	16
148697	0.0271	10
207659	0.0256	11
148699	0.0234	10
148698	0.0138	6
148695	0.0124	4
148700	0.0070	3

Top tissues by expression

239 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left ovary	UBERON:0002119	84.95	gold quality
metanephros cortex	UBERON:0010533	84.77	gold quality
right ovary	UBERON:0002118	84.22	gold quality
tibial nerve	UBERON:0001323	80.37	gold quality
calcaneal tendon	UBERON:0003701	78.75	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.45	gold quality
ovary	UBERON:0000992	78.26	gold quality
tibial artery	UBERON:0007610	78.25	gold quality
popliteal artery	UBERON:0002250	78.17	gold quality
left coronary artery	UBERON:0001626	75.29	gold quality
left adrenal gland cortex	UBERON:0035825	75.25	gold quality
right coronary artery	UBERON:0001625	74.74	gold quality
right adrenal gland cortex	UBERON:0035827	74.47	gold quality
left adrenal gland	UBERON:0001234	74.34	gold quality
adrenal cortex	UBERON:0001235	73.61	gold quality
right adrenal gland	UBERON:0001233	73.36	gold quality
coronary artery	UBERON:0001621	73.36	gold quality
sural nerve	UBERON:0015488	72.62	gold quality
adrenal gland	UBERON:0002369	72.60	gold quality
left uterine tube	UBERON:0001303	72.45	gold quality
gall bladder	UBERON:0002110	72.07	gold quality
aorta	UBERON:0000947	71.92	gold quality
metanephros	UBERON:0000081	71.72	gold quality
omental fat pad	UBERON:0010414	71.39	gold quality
peritoneum	UBERON:0002358	71.31	gold quality
adult mammalian kidney	UBERON:0000082	71.11	gold quality
right lobe of thyroid gland	UBERON:0001119	70.86	gold quality
left lobe of thyroid gland	UBERON:0001120	70.14	gold quality
thyroid gland	UBERON:0002046	69.71	gold quality
adipose tissue of abdominal region	UBERON:0007808	69.71	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.48

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 2)

• LncRNA LINC00924 upregulates NDRG2 to inhibit epithelial-mesenchymal transition via sponging miR-6755-5p in hepatitis B virus-related hepatocellular carcinoma. (PMID:34997970)
• Prognostic value of long noncoding RNA LINC00924 in lung adenocarcinoma and its regulatory effect on tumor progression. (PMID:37358073)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.