LINC00927

Summary

LINC00927 (long intergenic non-protein coding RNA 927, HGNC:27522) is a long non-coding RNA gene on chromosome 15q25.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27522
Approved symbol	LINC00927
Name	long intergenic non-protein coding RNA 927
Location	15q25.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000259361
Ensembl biotype	lncRNA
Entrez	283688
RNAcentral	URS000075ECBD — lncRNA, 2922 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 14 — 14 lncRNA

ENST00000558244, ENST00000558578, ENST00000558913, ENST00000561432, ENST00000647752, ENST00000657265, ENST00000794379, ENST00000794380, ENST00000794381, ENST00000794382, ENST00000794383, ENST00000794384, ENST00000794385, ENST00000794386

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000558244 — 3 exons

Exon	Start	End
ENSE00002539797	80278656	80280273
ENSE00002542879	80287815	80287853
ENSE00002575162	80341556	80341805

Expression profiles

Bgee: expression breadth broad, 66 present calls, max score 91.54.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0342 / max 31.1249, expressed in 4 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
151205	0.0142	3
151207	0.0122	3
151206	0.0078	3

Top tissues by expression

175 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	91.54	gold quality
right testis	UBERON:0004534	90.69	gold quality
testis	UBERON:0000473	87.07	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.27	gold quality
lateral nuclear group of thalamus	UBERON:0002736	62.27	gold quality
monocyte	CL:0000576	61.91	gold quality
buccal mucosa cell	CL:0002336	60.02	gold quality
tendon of biceps brachii	UBERON:0008188	59.64	gold quality
ganglionic eminence	UBERON:0004023	57.34	silver quality
tendon	UBERON:0000043	57.16	gold quality
gingival epithelium	UBERON:0001949	55.57	gold quality
trabecular bone tissue	UBERON:0002483	55.36	gold quality
gingiva	UBERON:0001828	55.33	gold quality
cartilage tissue	UBERON:0002418	52.88	gold quality
nasal cavity epithelium	UBERON:0005384	52.81	gold quality
lateral globus pallidus	UBERON:0002476	52.66	gold quality
oviduct epithelium	UBERON:0004804	52.39	gold quality
fallopian tube	UBERON:0003889	49.71	gold quality
tonsil	UBERON:0002372	49.22	gold quality
cerebellar vermis	UBERON:0004720	48.63	gold quality
upper leg skin	UBERON:0004262	48.48	silver quality
anatomical system	UBERON:0000467	48.08	gold quality
islet of Langerhans	UBERON:0000006	47.90	gold quality
sperm	CL:0000019	47.80	gold quality
gastrocnemius	UBERON:0001388	47.76	gold quality
prefrontal cortex	UBERON:0000451	47.68	silver quality
skin of hip	UBERON:0001554	47.66	silver quality
multicellular organism	UBERON:0000468	47.58	gold quality
material anatomical entity	UBERON:0000465	47.57	gold quality
bone marrow	UBERON:0002371	47.57	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.10

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.