LINC00929

Summary

LINC00929 (long intergenic non-protein coding RNA 929, HGNC:48615) is a long non-coding RNA gene on chromosome 15q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48615
Approved symbol	LINC00929
Name	long intergenic non-protein coding RNA 929
Location	15q12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000259150
Ensembl biotype	lncRNA
Entrez	503519
RNAcentral	URS000075E0C7 — lncRNA, 1194 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 25 — 25 lncRNA

ENST00000553382, ENST00000556159, ENST00000556213, ENST00000557523, ENST00000557672, ENST00000653113, ENST00000653950, ENST00000655230, ENST00000655889, ENST00000656772, ENST00000658029, ENST00000658161, ENST00000662745, ENST00000663189, ENST00000663322, ENST00000663624, ENST00000665527, ENST00000665897, ENST00000666709, ENST00000668127, ENST00000669086, ENST00000821429, ENST00000821430, ENST00000821431, ENST00000821432

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000553382 — 5 exons

Exon	Start	End
ENSE00002436131	26125209	26125313
ENSE00002470350	26115835	26116022
ENSE00002478998	26131670	26131749
ENSE00002485227	26116180	26116284
ENSE00002489926	26132884	26133032

Expression profiles

Bgee: expression breadth broad, 68 present calls, max score 77.35.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0419 / max 32.0270, expressed in 3 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
145561	0.0272	3
145560	0.0074	3
145562	0.0073	2

Top tissues by expression

177 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	77.35	gold quality
right testis	UBERON:0004534	76.42	gold quality
testis	UBERON:0000473	74.18	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	73.02	gold quality
ganglionic eminence	UBERON:0004023	61.03	gold quality
epithelium of nasopharynx	UBERON:0001951	59.48	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	56.30	gold quality
buccal mucosa cell	CL:0002336	55.42	gold quality
monocyte	CL:0000576	55.30	gold quality
cartilage tissue	UBERON:0002418	53.20	gold quality
lower esophagus mucosa	UBERON:0035834	52.39	gold quality
hindlimb stylopod muscle	UBERON:0004252	52.00	silver quality
prefrontal cortex	UBERON:0000451	50.83	silver quality
islet of Langerhans	UBERON:0000006	50.72	gold quality
trabecular bone tissue	UBERON:0002483	50.53	gold quality
sperm	CL:0000019	49.45	gold quality
muscle of leg	UBERON:0001383	48.87	gold quality
gastrocnemius	UBERON:0001388	48.04	gold quality
pancreas	UBERON:0001264	47.88	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	47.50	gold quality
blood	UBERON:0000178	47.18	silver quality
skin of abdomen	UBERON:0001416	47.09	gold quality
synovial joint	UBERON:0002217	46.47	gold quality
popliteal artery	UBERON:0002250	45.67	gold quality
tibial artery	UBERON:0007610	45.66	gold quality
anatomical system	UBERON:0000467	45.58	gold quality
skin of leg	UBERON:0001511	45.53	gold quality
right lobe of liver	UBERON:0001114	45.29	silver quality
material anatomical entity	UBERON:0000465	45.25	gold quality
multicellular organism	UBERON:0000468	45.25	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.61

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.