LINC00933

Summary

LINC00933 (long intergenic non-protein coding RNA 933, HGNC:48625) is a unprocessed pseudogene on chromosome 15q25.2.

At a glance

• Gene type: non-coding (transcribed_unprocessed_pseudogene) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48625
Approved symbol	LINC00933
Name	long intergenic non-protein coding RNA 933
Location	15q25.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000259728
Ensembl biotype	transcribed_unprocessed_pseudogene
Entrez	100506874
RNAcentral	URS000075E368 — lncRNA, 2689 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 transcribed_unprocessed_pseudogene

ENST00000559812

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000559812 — 2 exons

Exon	Start	End
ENSE00002538071	84577948	84578124
ENSE00002569069	84570924	84570965

Expression profiles

Bgee: expression breadth ubiquitous, 157 present calls, max score 83.97.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0076 / max 5.4130, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
207629	0.0076	3

Top tissues by expression

253 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.97	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	78.02	gold quality
right testis	UBERON:0004534	74.37	gold quality
left testis	UBERON:0004533	73.98	gold quality
testis	UBERON:0000473	72.90	gold quality
calcaneal tendon	UBERON:0003701	69.26	gold quality
stromal cell of endometrium	CL:0002255	67.99	gold quality
vagina	UBERON:0000996	66.13	gold quality
popliteal artery	UBERON:0002250	65.40	gold quality
tibial artery	UBERON:0007610	65.40	gold quality
ectocervix	UBERON:0012249	65.27	gold quality
descending thoracic aorta	UBERON:0002345	65.21	gold quality
lower esophagus mucosa	UBERON:0035834	65.10	gold quality
esophagus mucosa	UBERON:0002469	64.99	gold quality
right coronary artery	UBERON:0001625	64.89	gold quality
aorta	UBERON:0000947	64.78	gold quality
thoracic aorta	UBERON:0001515	64.30	gold quality
esophagus	UBERON:0001043	64.29	gold quality
endocervix	UBERON:0000458	64.22	gold quality
ascending aorta	UBERON:0001496	64.12	gold quality
lower esophagus	UBERON:0013473	63.83	gold quality
lower esophagus muscularis layer	UBERON:0035833	63.80	gold quality
smooth muscle tissue	UBERON:0001135	63.72	gold quality
uterine cervix	UBERON:0000002	63.55	gold quality
skin of leg	UBERON:0001511	63.19	gold quality
left coronary artery	UBERON:0001626	63.07	gold quality
right adrenal gland cortex	UBERON:0035827	62.66	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	62.58	gold quality
body of uterus	UBERON:0009853	62.53	gold quality
right adrenal gland	UBERON:0001233	62.24	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.53

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.