LINC00938

Summary

LINC00938 (long intergenic non-protein coding RNA 938, HGNC:48630) is a long non-coding RNA gene on chromosome 12q12.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48630
Approved symbol	LINC00938
Name	long intergenic non-protein coding RNA 938
Location	12q12
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000273015
Ensembl biotype	lncRNA
Entrez	400027
RNAcentral	URS000075BD44 — lncRNA, 2202 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000609803

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000609803 — 1 exons

Exon	Start	End
ENSE00003984711	45718046	45727860

Expression profiles

Bgee: expression breadth ubiquitous, 256 present calls, max score 93.75.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 6.5130 / max 217.0966, expressed in 1600 samples.

FANTOM5 promoters (4 alternative TSS)

Promoter ID	TPM avg	Samples expressed
130554	2.4484	1110
130552	2.3570	863
130555	1.6844	916
130553	0.0232	5

Top tissues by expression

256 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
thymus	UBERON:0002370	93.75	gold quality
tibialis anterior	UBERON:0001385	93.05	gold quality
epithelial cell of pancreas	CL:0000083	92.60	gold quality
deltoid	UBERON:0001476	90.34	gold quality
pigmented layer of retina	UBERON:0001782	90.32	gold quality
cardiac muscle of right atrium	UBERON:0003379	90.16	gold quality
vastus lateralis	UBERON:0001379	89.13	gold quality
quadriceps femoris	UBERON:0001377	89.03	gold quality
ileal mucosa	UBERON:0000331	88.78	gold quality
layer of synovial tissue	UBERON:0007616	88.59	gold quality
left ventricle myocardium	UBERON:0006566	88.51	gold quality
penis	UBERON:0000989	87.85	gold quality
jejunum	UBERON:0002115	87.61	gold quality
biceps brachii	UBERON:0001507	86.87	gold quality
germinal epithelium of ovary	UBERON:0001304	86.53	gold quality
mucosa of paranasal sinus	UBERON:0005030	86.46	gold quality
pancreatic ductal cell	CL:0002079	86.41	gold quality
heart right ventricle	UBERON:0002080	86.37	gold quality
saphenous vein	UBERON:0007318	86.11	gold quality
superior surface of tongue	UBERON:0007371	86.10	gold quality
urethra	UBERON:0000057	85.96	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	85.94	gold quality
myocardium	UBERON:0002349	85.89	gold quality
jejunal mucosa	UBERON:0000399	85.86	gold quality
epithelium of nasopharynx	UBERON:0001951	85.56	gold quality
esophagus squamous epithelium	UBERON:0006920	85.51	gold quality
skin of hip	UBERON:0001554	85.39	gold quality
synovial joint	UBERON:0002217	85.28	gold quality
renal medulla	UBERON:0000362	85.19	gold quality
body of tongue	UBERON:0011876	84.99	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.44

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.