LINC00939

Summary

LINC00939 (long intergenic non-protein coding RNA 939, HGNC:48631) is a long non-coding RNA gene on chromosome 12q24.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48631
Approved symbol	LINC00939
Name	long intergenic non-protein coding RNA 939
Location	12q24.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249267
Ensembl biotype	lncRNA
Entrez	400084
RNAcentral	URS000075A2C3 — lncRNA, 2092 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 26 — 26 lncRNA

ENST00000502479, ENST00000507313, ENST00000545784, ENST00000653452, ENST00000668374, ENST00000702017, ENST00000822064, ENST00000822065, ENST00000822066, ENST00000822067, ENST00000822068, ENST00000822069, ENST00000822070, ENST00000822071, ENST00000822072, ENST00000822073, ENST00000822074, ENST00000822075, ENST00000822076, ENST00000822077, ENST00000822078, ENST00000822079, ENST00000822080, ENST00000822081, ENST00000822082, ENST00000822083

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000502479 — 6 exons

Exon	Start	End
ENSE00001441774	125967194	125967342
ENSE00002021220	125961742	125961981
ENSE00002044944	125969811	125969996
ENSE00002048191	125980201	125980448
ENSE00002049964	125963011	125966908
ENSE00002063907	125958702	125958952

Expression profiles

Bgee: expression breadth broad, 95 present calls, max score 78.85.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0703 / max 6.6433, expressed in 33 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
134073	0.0703	33

Top tissues by expression

225 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sperm	CL:0000019	78.85	silver quality
male germ cell	CL:0000015	76.47	silver quality
right lobe of liver	UBERON:0001114	72.84	gold quality
right uterine tube	UBERON:0001302	68.66	gold quality
liver	UBERON:0002107	67.55	gold quality
bronchial epithelial cell	CL:0002328	61.48	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	61.36	gold quality
ganglionic eminence	UBERON:0004023	60.12	gold quality
minor salivary gland	UBERON:0001830	60.06	gold quality
epithelium of bronchus	UBERON:0002031	59.88	silver quality
cartilage tissue	UBERON:0002418	59.84	gold quality
secondary oocyte	CL:0000655	59.79	gold quality
diaphragm	UBERON:0001103	59.74	gold quality
right testis	UBERON:0004534	59.65	gold quality
left testis	UBERON:0004533	59.24	gold quality
bronchus	UBERON:0002185	59.18	silver quality
ventricular zone	UBERON:0003053	58.76	silver quality
cortical plate	UBERON:0005343	58.70	silver quality
testis	UBERON:0000473	58.64	gold quality
saliva-secreting gland	UBERON:0001044	58.29	gold quality
placenta	UBERON:0001987	58.16	gold quality
oviduct epithelium	UBERON:0004804	58.02	silver quality
epithelium of nasopharynx	UBERON:0001951	57.75	gold quality
mouth mucosa	UBERON:0003729	57.27	gold quality
gluteal muscle	UBERON:0002000	56.99	gold quality
triceps brachii	UBERON:0001509	56.82	gold quality
endothelial cell	CL:0000115	55.84	gold quality
fallopian tube	UBERON:0003889	55.35	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	54.26	silver quality
lower esophagus mucosa	UBERON:0035834	54.10	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.74

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.