LINC00940

Summary

LINC00940 (long intergenic non-protein coding RNA 940, HGNC:48634) is a long non-coding RNA gene on chromosome 12p13.33.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48634
Approved symbol	LINC00940
Name	long intergenic non-protein coding RNA 940
Location	12p13.33
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235049
Ensembl biotype	lncRNA
Entrez	100271702
RNAcentral	URS000075EDAE — lncRNA, 2352 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000418006

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000418006 — 2 exons

Exon	Start	End
ENSE00001601288	1936454	1936574
ENSE00001804023	1929202	1931430

Expression profiles

Bgee: expression breadth ubiquitous, 106 present calls, max score 70.23.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0896 / max 9.9506, expressed in 50 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
128951	0.0896	50

Top tissues by expression

106 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
C1 segment of cervical spinal cord	UBERON:0006469	70.23	gold quality
right adrenal gland	UBERON:0001233	67.68	gold quality
left adrenal gland	UBERON:0001234	66.05	gold quality
adrenal gland	UBERON:0002369	66.00	gold quality
left adrenal gland cortex	UBERON:0035825	65.76	gold quality
substantia nigra	UBERON:0002038	65.47	gold quality
right adrenal gland cortex	UBERON:0035827	64.96	gold quality
fundus of stomach	UBERON:0001160	64.26	gold quality
body of pancreas	UBERON:0001150	59.67	gold quality
pancreas	UBERON:0001264	59.63	gold quality
body of stomach	UBERON:0001161	59.38	gold quality
Ammon’s horn	UBERON:0001954	59.23	gold quality
stomach	UBERON:0000945	59.21	gold quality
mucosa of transverse colon	UBERON:0004991	57.86	gold quality
ganglionic eminence	UBERON:0004023	57.82	silver quality
rectum	UBERON:0001052	57.03	gold quality
prefrontal cortex	UBERON:0000451	56.70	gold quality
transverse colon	UBERON:0001157	56.15	gold quality
putamen	UBERON:0001874	56.11	gold quality
right testis	UBERON:0004534	54.99	gold quality
tibial artery	UBERON:0007610	54.65	gold quality
popliteal artery	UBERON:0002250	54.64	gold quality
primary visual cortex	UBERON:0002436	54.27	gold quality
sural nerve	UBERON:0015488	53.68	silver quality
cortex of kidney	UBERON:0001225	53.26	gold quality
muscle tissue	UBERON:0002385	52.81	gold quality
hypothalamus	UBERON:0001898	52.55	gold quality
Brodmann (1909) area 9	UBERON:0013540	52.35	gold quality
caudate nucleus	UBERON:0001873	52.32	gold quality
temporal lobe	UBERON:0001871	52.27	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.31

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.