LINC00954

Summary

LINC00954 (long intergenic non-protein coding RNA 954, HGNC:48668) is a long non-coding RNA gene on chromosome 2p24.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48668
Approved symbol	LINC00954
Name	long intergenic non-protein coding RNA 954
Location	2p24.1
Locus type	RNA, long non-coding
Status	Approved
Aliases	FLJ12334
Ensembl gene	ENSG00000228784
Ensembl biotype	lncRNA
Entrez	400946
RNAcentral	URS000075EEFA — lncRNA, 3030 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 19 — 19 lncRNA

ENST00000433669, ENST00000449086, ENST00000456119, ENST00000607100, ENST00000649549, ENST00000653306, ENST00000654739, ENST00000655598, ENST00000662620, ENST00000760062, ENST00000760063, ENST00000760064, ENST00000760065, ENST00000760066, ENST00000760067, ENST00000760068, ENST00000760069, ENST00000760070, ENST00000760071

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000433669 — 6 exons

Exon	Start	End
ENSE00001597141	19869496	19869613
ENSE00001597720	19873132	19873364
ENSE00001613615	19875803	19877535
ENSE00001655687	19870425	19870546
ENSE00001709635	19872393	19872596
ENSE00001785918	19868874	19868952

Expression profiles

Bgee: expression breadth ubiquitous, 163 present calls, max score 83.25.

FANTOM5 (CAGE): breadth broad, TPM avg 1.5190 / max 60.5623, expressed in 418 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
19113	1.1185	330
19112	0.4005	166

Top tissues by expression

242 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
buccal mucosa cell	CL:0002336	83.25	gold quality
pituitary gland	UBERON:0000007	78.11	gold quality
blood	UBERON:0000178	77.45	gold quality
bone marrow cell	CL:0002092	77.00	gold quality
adenohypophysis	UBERON:0002196	76.92	gold quality
granulocyte	CL:0000094	75.84	gold quality
monocyte	CL:0000576	74.89	gold quality
vermiform appendix	UBERON:0001154	74.85	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	74.57	silver quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	74.48	gold quality
spleen	UBERON:0002106	74.34	gold quality
leukocyte	CL:0000738	74.20	gold quality
lymph node	UBERON:0000029	73.86	gold quality
small intestine Peyer’s patch	UBERON:0003454	73.80	gold quality
right ovary	UBERON:0002118	71.87	gold quality
left ovary	UBERON:0002119	71.35	gold quality
thymus	UBERON:0002370	70.71	gold quality
small intestine	UBERON:0002108	70.67	gold quality
right uterine tube	UBERON:0001302	70.45	gold quality
metanephros cortex	UBERON:0010533	70.41	gold quality
vagina	UBERON:0000996	69.73	gold quality
tendon of biceps brachii	UBERON:0008188	69.70	silver quality
right coronary artery	UBERON:0001625	68.88	gold quality
caecum	UBERON:0001153	68.23	gold quality
body of uterus	UBERON:0009853	68.05	gold quality
rectum	UBERON:0001052	67.65	gold quality
endocervix	UBERON:0000458	67.58	gold quality
colonic epithelium	UBERON:0000397	67.32	silver quality
ectocervix	UBERON:0012249	66.84	gold quality
ovary	UBERON:0000992	66.51	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	4.73

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.