LINC00964

Summary

LINC00964 (long intergenic non-protein coding RNA 964, HGNC:27226) is a long non-coding RNA gene on chromosome 8q24.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27226
Approved symbol	LINC00964
Name	long intergenic non-protein coding RNA 964
Location	8q24.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000249816
Ensembl biotype	lncRNA
Entrez	157381
RNAcentral	URS000075AC1C — lncRNA, 3595 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 103 — 103 lncRNA

ENST00000504665, ENST00000510897, ENST00000525292, ENST00000528090, ENST00000529135, ENST00000529478, ENST00000530549, ENST00000532713, ENST00000533286, ENST00000653724, ENST00000653797, ENST00000654275, ENST00000654344, ENST00000654805, ENST00000655319, ENST00000655637, ENST00000655947, ENST00000656062, ENST00000656094, ENST00000656280, ENST00000656339, ENST00000656467, ENST00000656616, ENST00000656869, ENST00000657296, ENST00000657463, ENST00000657718, ENST00000657752, ENST00000657807, ENST00000658039, ENST00000658171, ENST00000658422, ENST00000659472, ENST00000659706, ENST00000660004, ENST00000660300, ENST00000660364, ENST00000660517, ENST00000661165, ENST00000661407, ENST00000661433, ENST00000661949, ENST00000662253, ENST00000662376, ENST00000662419, ENST00000662674, ENST00000663062, ENST00000663141, ENST00000663195, ENST00000663231, ENST00000663450, ENST00000663475, ENST00000663642, ENST00000663765, ENST00000663920, ENST00000663922, ENST00000663940, ENST00000663965, ENST00000664110, ENST00000664218, ENST00000664707, ENST00000664851, ENST00000665263, ENST00000665293, ENST00000665389, ENST00000665494, ENST00000666477, ENST00000666508, ENST00000666745, ENST00000667269, ENST00000667605, ENST00000668837, ENST00000669297, ENST00000669524, ENST00000670035, ENST00000670165, ENST00000670200, ENST00000670322, ENST00000670566, ENST00000670706, ENST00000670950, ENST00000671263, ENST00000671628, ENST00000759225, ENST00000759226, ENST00000759227, ENST00000759228, ENST00000759229, ENST00000759230, ENST00000759231, ENST00000759232, ENST00000759233, ENST00000759234, ENST00000759235, ENST00000759236, ENST00000759237, ENST00000759238, ENST00000759239, ENST00000759240, ENST00000759241, ENST00000759242, ENST00000759243, ENST00000759244

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000504665 — 4 exons

Exon	Start	End
ENSE00002022152	124946055	124946159
ENSE00002031715	124950816	124951095
ENSE00002034157	124944179	124945746
ENSE00002078786	124947543	124947792

Expression profiles

Bgee: expression breadth ubiquitous, 162 present calls, max score 89.14.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.5226 / max 94.1138, expressed in 141 samples.

FANTOM5 promoters (7 alternative TSS)

Promoter ID	TPM avg	Samples expressed
90519	0.3148	72
90520	0.0693	33
90521	0.0532	20
90518	0.0414	16
90517	0.0275	7
90522	0.0086	3
90523	0.0078	3

Top tissues by expression

247 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right testis	UBERON:0004534	89.14	gold quality
left testis	UBERON:0004533	89.03	gold quality
testis	UBERON:0000473	86.09	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	83.98	gold quality
right uterine tube	UBERON:0001302	80.14	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	76.18	gold quality
lower esophagus mucosa	UBERON:0035834	74.39	gold quality
prostate gland	UBERON:0002367	71.27	gold quality
skin of abdomen	UBERON:0001416	69.42	gold quality
apex of heart	UBERON:0002098	69.27	gold quality
esophagus mucosa	UBERON:0002469	69.18	gold quality
skin of leg	UBERON:0001511	69.05	gold quality
bronchial epithelial cell	CL:0002328	68.45	gold quality
cauda epididymis	UBERON:0004360	68.45	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	68.43	gold quality
right atrium auricular region	UBERON:0006631	67.67	gold quality
bronchus	UBERON:0002185	67.18	gold quality
corpus epididymis	UBERON:0004359	66.88	gold quality
cardiac atrium	UBERON:0002081	66.51	gold quality
zone of skin	UBERON:0000014	66.29	gold quality
heart left ventricle	UBERON:0002084	66.07	gold quality
cardiac ventricle	UBERON:0002082	65.20	gold quality
vagina	UBERON:0000996	64.16	gold quality
minor salivary gland	UBERON:0001830	63.44	gold quality
bone marrow cell	CL:0002092	63.32	silver quality
heart	UBERON:0000948	63.30	gold quality
caput epididymis	UBERON:0004358	63.13	gold quality
right lung	UBERON:0002167	62.94	gold quality
sperm	CL:0000019	62.88	silver quality
ventricular zone	UBERON:0003053	62.68	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	4.35

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.