LINC00971

Summary

LINC00971 (long intergenic non-protein coding RNA 971, HGNC:48737) is a long non-coding RNA gene on chromosome 3p12.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48737
Approved symbol	LINC00971
Name	long intergenic non-protein coding RNA 971
Location	3p12.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000242641
Ensembl biotype	lncRNA
Entrez	440970
RNAcentral	URS000075E7C3 — lncRNA, 7319 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 9 — 9 lncRNA

ENST00000482721, ENST00000484892, ENST00000491849, ENST00000652873, ENST00000653196, ENST00000653986, ENST00000654507, ENST00000658763, ENST00000661490

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000482721 — 4 exons

Exon	Start	End
ENSE00001809569	84868598	84868668
ENSE00001812681	84802449	84802752
ENSE00001831988	84868903	84869024
ENSE00001890371	84869591	84869628

Expression profiles

Bgee: expression breadth broad, 78 present calls, max score 79.96.

Top tissues by expression

78 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.96	gold quality
sural nerve	UBERON:0015488	73.19	silver quality
bone marrow cell	CL:0002092	69.83	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	69.62	gold quality
muscle tissue	UBERON:0002385	67.85	gold quality
testis	UBERON:0000473	66.79	gold quality
left testis	UBERON:0004533	66.67	gold quality
right testis	UBERON:0004534	65.09	gold quality
ganglionic eminence	UBERON:0004023	60.89	gold quality
cortical plate	UBERON:0005343	60.54	gold quality
bone marrow	UBERON:0002371	59.65	silver quality
liver	UBERON:0002107	59.07	gold quality
leukocyte	CL:0000738	54.61	gold quality
monocyte	CL:0000576	54.56	gold quality
primary visual cortex	UBERON:0002436	52.44	gold quality
blood	UBERON:0000178	51.38	gold quality
multicellular organism	UBERON:0000468	51.28	gold quality
right lobe of liver	UBERON:0001114	49.42	silver quality
prostate gland	UBERON:0002367	48.68	gold quality
islet of Langerhans	UBERON:0000006	47.85	gold quality
gall bladder	UBERON:0002110	47.51	gold quality
gastrocnemius	UBERON:0001388	46.98	silver quality
heart left ventricle	UBERON:0002084	45.72	silver quality
heart	UBERON:0000948	44.94	gold quality
mucosa of transverse colon	UBERON:0004991	44.94	gold quality
tibial artery	UBERON:0007610	44.84	silver quality
left coronary artery	UBERON:0001626	43.90	gold quality
body of pancreas	UBERON:0001150	43.49	silver quality
tibial nerve	UBERON:0001323	43.27	gold quality
frontal cortex	UBERON:0001870	43.10	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.05

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.