LINC00996

Summary

LINC00996 (long intergenic non-protein coding RNA 996, HGNC:27800) is a long non-coding RNA gene on chromosome 7q36.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27800
Approved symbol	LINC00996
Name	long intergenic non-protein coding RNA 996
Location	7q36.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000242258
Ensembl biotype	lncRNA
Entrez	285972
RNAcentral	URS000054D820 — lncRNA, 2043 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 7 — 7 lncRNA

ENST00000477392, ENST00000486954, ENST00000692633, ENST00000765372, ENST00000765373, ENST00000765374, ENST00000765375

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000477392 — 4 exons

Exon	Start	End
ENSE00001831086	150447076	150448140
ENSE00001879054	150442549	150443160
ENSE00001907727	150446700	150446889
ENSE00001921501	150433654	150433829

Expression profiles

Bgee: expression breadth ubiquitous, 151 present calls, max score 81.38.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.7843 / max 152.4426, expressed in 164 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
81940	0.5639	106
81941	0.1792	64
81939	0.0412	13

Top tissues by expression

235 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
spleen	UBERON:0002106	81.38	gold quality
lymph node	UBERON:0000029	77.50	gold quality
granulocyte	CL:0000094	77.35	gold quality
vermiform appendix	UBERON:0001154	74.22	gold quality
rectum	UBERON:0001052	73.47	gold quality
bone marrow cell	CL:0002092	72.85	gold quality
small intestine Peyer’s patch	UBERON:0003454	71.69	gold quality
small intestine	UBERON:0002108	70.84	gold quality
gall bladder	UBERON:0002110	70.58	gold quality
monocyte	CL:0000576	70.03	gold quality
leukocyte	CL:0000738	70.00	gold quality
mucosa of transverse colon	UBERON:0004991	68.59	gold quality
jejunal mucosa	UBERON:0000399	67.11	gold quality
caecum	UBERON:0001153	66.91	gold quality
duodenum	UBERON:0002114	66.08	gold quality
cortical plate	UBERON:0005343	64.04	gold quality
stromal cell of endometrium	CL:0002255	61.88	gold quality
transverse colon	UBERON:0001157	60.73	gold quality
putamen	UBERON:0001874	60.48	gold quality
intestine	UBERON:0000160	60.20	gold quality
ganglionic eminence	UBERON:0004023	59.84	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.62	gold quality
tonsil	UBERON:0002372	59.55	gold quality
right lung	UBERON:0002167	59.43	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	59.27	gold quality
upper lobe of left lung	UBERON:0008952	58.63	gold quality
nucleus accumbens	UBERON:0001882	58.20	gold quality
upper lobe of lung	UBERON:0008948	57.98	gold quality
caudate nucleus	UBERON:0001873	57.86	gold quality
palpebral conjunctiva	UBERON:0001812	57.77	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.68

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.