LINC01001

Summary

LINC01001 (long intergenic non-protein coding RNA 1001, HGNC:38540) is a long non-coding RNA gene on chromosome 11p15.5.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:38540
Approved symbol	LINC01001
Name	long intergenic non-protein coding RNA 1001
Location	11p15.5
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000230724
Ensembl biotype	lncRNA
Entrez	100133161
RNAcentral	URS0000BC4565 — lncRNA, 4400 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000526704, ENST00000527683, ENST00000607448, ENST00000850576

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000526704 — 7 exons

Exon	Start	End
ENSE00001632181	138047	138111
ENSE00001636520	138956	138998
ENSE00001720635	133588	133778
ENSE00002171998	129572	131373
ENSE00003280498	131467	131524
ENSE00003415211	127204	127462
ENSE00004282188	127514	127648

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 97.32.

Top tissues by expression

133 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right testis	UBERON:0004534	97.32	gold quality
blood	UBERON:0000178	97.24	gold quality
left testis	UBERON:0004533	97.14	gold quality
testis	UBERON:0000473	95.70	gold quality
granulocyte	CL:0000094	95.41	gold quality
spleen	UBERON:0002106	93.18	gold quality
bone marrow	UBERON:0002371	92.97	gold quality
bone marrow cell	CL:0002092	92.17	gold quality
mucosa of stomach	UBERON:0001199	91.72	gold quality
right uterine tube	UBERON:0001302	90.74	gold quality
right lung	UBERON:0002167	90.25	gold quality
esophagus mucosa	UBERON:0002469	90.12	gold quality
left ovary	UBERON:0002119	90.11	gold quality
upper lobe of left lung	UBERON:0008952	89.39	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	88.91	gold quality
lower esophagus mucosa	UBERON:0035834	88.91	gold quality
ovary	UBERON:0000992	88.49	gold quality
right ovary	UBERON:0002118	88.26	gold quality
apex of heart	UBERON:0002098	87.90	gold quality
cortex of kidney	UBERON:0001225	87.69	gold quality
esophagus	UBERON:0001043	87.48	gold quality
prostate gland	UBERON:0002367	87.47	gold quality
skin of leg	UBERON:0001511	87.41	gold quality
minor salivary gland	UBERON:0001830	87.08	gold quality
primary visual cortex	UBERON:0002436	87.02	gold quality
pituitary gland	UBERON:0000007	87.00	gold quality
body of pancreas	UBERON:0001150	87.00	gold quality
left lobe of thyroid gland	UBERON:0001120	86.77	gold quality
zone of skin	UBERON:0000014	86.76	gold quality
metanephros cortex	UBERON:0010533	86.74	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	3.78

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.