LINC01002

Summary

LINC01002 (long intergenic non-protein coding RNA 1002, HGNC:38538) is a long non-coding RNA gene on chromosome 19p13.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:38538
Approved symbol	LINC01002
Name	long intergenic non-protein coding RNA 1002
Location	19p13.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000282508
Ensembl biotype	lncRNA
Entrez	399844
RNAcentral	URS000075C832 — lncRNA, 4874 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 49 — 34 lncRNA, 15 retained_intron

ENST00000587432, ENST00000631401, ENST00000631412, ENST00000631484, ENST00000631644, ENST00000631764, ENST00000631772, ENST00000631797, ENST00000631832, ENST00000631858, ENST00000631864, ENST00000631988, ENST00000632075, ENST00000632086, ENST00000632102, ENST00000632203, ENST00000632351, ENST00000632397, ENST00000632405, ENST00000632624, ENST00000632747, ENST00000632790, ENST00000633109, ENST00000633151, ENST00000633179, ENST00000633199, ENST00000633295, ENST00000633344, ENST00000633363, ENST00000633402, ENST00000633522, ENST00000633592, ENST00000633671, ENST00000633674, ENST00000633773, ENST00000633808, ENST00000633951, ENST00000634022, ENST00000634025, ENST00000660559, ENST00000666656, ENST00000715915, ENST00000715916, ENST00000844199, ENST00000844200, ENST00000844201, ENST00000844202, ENST00000844203, ENST00000844204

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000587432 — 3 exons

Exon	Start	End
ENSE00002672754	190727	191354
ENSE00002880392	195504	195831
ENSE00004028330	198284	198345

Expression profiles

Bgee: expression breadth ubiquitous, 133 present calls, max score 99.62.

Top tissues by expression

133 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
blood	UBERON:0000178	99.62	gold quality
right testis	UBERON:0004534	99.37	gold quality
left testis	UBERON:0004533	99.36	gold quality
granulocyte	CL:0000094	98.66	gold quality
testis	UBERON:0000473	98.65	gold quality
lower esophagus mucosa	UBERON:0035834	98.60	gold quality
bone marrow cell	CL:0002092	98.43	gold quality
spleen	UBERON:0002106	98.26	gold quality
bone marrow	UBERON:0002371	97.98	gold quality
esophagus mucosa	UBERON:0002469	97.72	gold quality
mucosa of stomach	UBERON:0001199	97.15	gold quality
sural nerve	UBERON:0015488	97.08	gold quality
upper lobe of left lung	UBERON:0008952	96.99	gold quality
monocyte	CL:0000576	96.55	gold quality
right uterine tube	UBERON:0001302	96.52	gold quality
leukocyte	CL:0000738	96.43	gold quality
minor salivary gland	UBERON:0001830	96.22	gold quality
right lung	UBERON:0002167	95.94	gold quality
body of pancreas	UBERON:0001150	95.75	gold quality
vermiform appendix	UBERON:0001154	95.68	gold quality
colonic epithelium	UBERON:0000397	95.62	gold quality
saliva-secreting gland	UBERON:0001044	95.54	gold quality
left ovary	UBERON:0002119	95.50	gold quality
prostate gland	UBERON:0002367	95.44	gold quality
primary visual cortex	UBERON:0002436	95.43	gold quality
pituitary gland	UBERON:0000007	95.30	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	95.02	gold quality
adenohypophysis	UBERON:0002196	94.86	gold quality
lung	UBERON:0002048	94.80	gold quality
right lobe of thyroid gland	UBERON:0001119	94.72	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.92

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 2)

• LINC01002 Targets miR-650/FLNA Pathway to Suppress Prostate Cancer Progression. (PMID:37040719)
• LINC01002 functions as a ceRNA to regulate FRMD8 by sponging miR-4324 for the development of COVID-19. (PMID:38734674)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.