LINC01003

Summary

LINC01003 (long intergenic non-protein coding RNA 1003, HGNC:48957) is a long non-coding RNA gene on chromosome 7q36.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48957
Approved symbol	LINC01003
Name	long intergenic non-protein coding RNA 1003
Location	7q36.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000261455
Ensembl biotype	lncRNA
Entrez	100128822
RNAcentral	URS000075996F — lncRNA, 1438 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000564834, ENST00000766419, ENST00000766420

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000564834 — 1 exons

Exon	Start	End
ENSE00002593757	152463786	152465549

Expression profiles

Bgee: expression breadth ubiquitous, 247 present calls, max score 94.17.

FANTOM5 (CAGE): breadth ubiquitous, TPM avg 3.2780 / max 46.9430, expressed in 1317 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
82137	2.4511	1136
82136	0.8269	500

Top tissues by expression

254 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
endothelial cell	CL:0000115	94.17	gold quality
vastus lateralis	UBERON:0001379	89.49	gold quality
pigmented layer of retina	UBERON:0001782	89.20	gold quality
corpus epididymis	UBERON:0004359	89.07	gold quality
quadriceps femoris	UBERON:0001377	88.97	gold quality
biceps brachii	UBERON:0001507	87.01	gold quality
tibialis anterior	UBERON:0001385	86.98	gold quality
parotid gland	UBERON:0001831	86.35	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	86.33	gold quality
ileal mucosa	UBERON:0000331	85.61	gold quality
skeletal muscle tissue of biceps brachii	UBERON:0004502	85.37	gold quality
adult organism	UBERON:0007023	84.59	gold quality
placenta	UBERON:0001987	84.11	gold quality
palpebral conjunctiva	UBERON:0001812	84.09	gold quality
epithelial cell of pancreas	CL:0000083	83.84	gold quality
deltoid	UBERON:0001476	82.93	gold quality
bronchial epithelial cell	CL:0002328	82.81	gold quality
monocyte	CL:0000576	82.74	gold quality
caput epididymis	UBERON:0004358	82.68	gold quality
leukocyte	CL:0000738	82.41	gold quality
skin of hip	UBERON:0001554	82.12	gold quality
germinal epithelium of ovary	UBERON:0001304	81.60	gold quality
bronchus	UBERON:0002185	81.39	gold quality
gastrocnemius	UBERON:0001388	81.21	gold quality
heart right ventricle	UBERON:0002080	81.16	gold quality
skeletal muscle tissue	UBERON:0001134	80.96	gold quality
thymus	UBERON:0002370	80.67	gold quality
muscle of leg	UBERON:0001383	80.65	gold quality
cortical plate	UBERON:0005343	80.32	gold quality
amniotic fluid	UBERON:0000173	80.24	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.77

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• m[6]A-mediated upregulation of LINC01003 regulates cell migration by targeting the CAV1/FAK signaling pathway in glioma. (PMID:37270527)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.