LINC01007

Summary

LINC01007 (long intergenic non-protein coding RNA 1007, HGNC:48973) is a long non-coding RNA gene on chromosome 7q22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48973
Approved symbol	LINC01007
Name	long intergenic non-protein coding RNA 1007
Location	7q22.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233123
Ensembl biotype	lncRNA
Entrez	100506527
RNAcentral	URS000075D3DA — lncRNA, 2349 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000434537, ENST00000437900, ENST00000451953, ENST00000731541

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000434537 — 2 exons

Exon	Start	End
ENSE00001726189	101568850	101568976
ENSE00001731145	101565306	101567480

Expression profiles

Bgee: expression breadth broad, 67 present calls, max score 91.71.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.6240 / max 139.0351, expressed in 39 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
85338	0.4087	36
85339	0.1451	33
85340	0.0702	28

Top tissues by expression

192 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	91.71	gold quality
right hemisphere of cerebellum	UBERON:0014890	87.52	gold quality
right frontal lobe	UBERON:0002810	85.23	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	84.09	gold quality
prefrontal cortex	UBERON:0000451	84.06	gold quality
Brodmann (1909) area 9	UBERON:0013540	82.97	gold quality
cerebellar hemisphere	UBERON:0002245	81.61	gold quality
frontal cortex	UBERON:0001870	81.43	gold quality
anterior cingulate cortex	UBERON:0009835	80.82	gold quality
neocortex	UBERON:0001950	80.31	gold quality
Brodmann (1909) area 46	UBERON:0006483	79.44	gold quality
cerebral cortex	UBERON:0000956	76.71	gold quality
endothelial cell	CL:0000115	75.73	gold quality
superior frontal gyrus	UBERON:0002661	73.06	gold quality
middle temporal gyrus	UBERON:0002771	71.52	gold quality
forebrain	UBERON:0001890	69.42	gold quality
pancreatic ductal cell	CL:0002079	69.00	silver quality
brain	UBERON:0000955	68.05	gold quality
entorhinal cortex	UBERON:0002728	67.46	gold quality
tibialis anterior	UBERON:0001385	67.23	silver quality
temporal lobe	UBERON:0001871	66.14	gold quality
amygdala	UBERON:0001876	65.22	gold quality
postcentral gyrus	UBERON:0002581	64.08	gold quality
Brodmann (1909) area 23	UBERON:0013554	64.02	gold quality
ileal mucosa	UBERON:0000331	63.44	silver quality
parietal lobe	UBERON:0001872	63.04	gold quality
superficial temporal artery	UBERON:0001614	62.61	gold quality
myocardium	UBERON:0002349	62.02	gold quality
primary visual cortex	UBERON:0002436	61.51	gold quality
occipital lobe	UBERON:0002021	58.47	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.