LINC01011

Summary

LINC01011 (long intergenic non-protein coding RNA 1011, HGNC:33812) is a long non-coding RNA gene on chromosome 6p25.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:33812
Approved symbol	LINC01011
Name	long intergenic non-protein coding RNA 1011
Location	6p25.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	CISAL, DKFZp686I15217
Ensembl gene	ENSG00000244041
Ensembl biotype	lncRNA
OMIM	621279
Entrez	401232
RNAcentral	URS000075DCAC — lncRNA, 1591 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000445000, ENST00000450238, ENST00000454015, ENST00000605901

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000445000 — 2 exons

Exon	Start	End
ENSE00001595929	2988428	2991173
ENSE00001697990	2987967	2988031

Expression profiles

Bgee: expression breadth ubiquitous, 135 present calls, max score 93.50.

FANTOM5 (CAGE): breadth broad, TPM avg 1.5957 / max 200.9506, expressed in 391 samples.

FANTOM5 promoters (3 alternative TSS)

Promoter ID	TPM avg	Samples expressed
65499	1.6852	882
65498	1.2091	241
65500	0.3866	176

Top tissues by expression

138 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
thymus	UBERON:0002370	93.50	silver quality
monocyte	CL:0000576	84.47	gold quality
cerebellar vermis	UBERON:0004720	84.00	gold quality
leukocyte	CL:0000738	83.63	gold quality
right hemisphere of cerebellum	UBERON:0014890	81.32	gold quality
cerebellar cortex	UBERON:0002129	81.20	gold quality
cerebellar hemisphere	UBERON:0002245	81.20	gold quality
cerebellum	UBERON:0002037	81.12	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	79.03	silver quality
quadriceps femoris	UBERON:0001377	77.38	gold quality
spinal cord	UBERON:0002240	77.33	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	77.28	gold quality
substantia nigra	UBERON:0002038	77.13	gold quality
primary visual cortex	UBERON:0002436	76.23	gold quality
right uterine tube	UBERON:0001302	75.99	gold quality
popliteal artery	UBERON:0002250	75.99	gold quality
tibial artery	UBERON:0007610	75.97	gold quality
superior frontal gyrus	UBERON:0002661	75.90	gold quality
right frontal lobe	UBERON:0002810	75.79	gold quality
right coronary artery	UBERON:0001625	75.74	gold quality
descending thoracic aorta	UBERON:0002345	75.72	gold quality
Ammon’s horn	UBERON:0001954	75.63	gold quality
amygdala	UBERON:0001876	75.50	gold quality
anterior cingulate cortex	UBERON:0009835	75.45	gold quality
temporal lobe	UBERON:0001871	75.41	gold quality
blood	UBERON:0000178	75.37	gold quality
brain	UBERON:0000955	75.37	gold quality
hypothalamus	UBERON:0001898	75.22	gold quality
cortical plate	UBERON:0005343	75.08	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	75.03	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.66

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.