LINC01015

Summary

LINC01015 (long intergenic non-protein coding RNA 1015, HGNC:48988) is a long non-coding RNA gene on chromosome 6p22.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:48988
Approved symbol	LINC01015
Name	long intergenic non-protein coding RNA 1015
Location	6p22.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000224582
Ensembl biotype	lncRNA
Entrez	100507362
RNAcentral	URS000075CB7B — lncRNA, 2817 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000434657, ENST00000445296, ENST00000647732, ENST00000648831, ENST00000658484

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000434657 — 3 exons

Exon	Start	End
ENSE00001653340	29529420	29529584
ENSE00001762243	29529949	29530043
ENSE00001765465	29531052	29533665

Expression profiles

Bgee: expression breadth broad, 33 present calls, max score 82.52.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0193 / max 22.5542, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
66652	0.0193	3

Top tissues by expression

33 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
right testis	UBERON:0004534	82.52	gold quality
left testis	UBERON:0004533	81.89	gold quality
testis	UBERON:0000473	81.27	gold quality
multicellular organism	UBERON:0000468	69.88	gold quality
gastrocnemius	UBERON:0001388	53.22	gold quality
tibial nerve	UBERON:0001323	52.14	gold quality
right frontal lobe	UBERON:0002810	49.46	gold quality
blood	UBERON:0000178	48.11	gold quality
right atrium auricular region	UBERON:0006631	46.56	gold quality
body of stomach	UBERON:0001161	46.05	gold quality
esophagus mucosa	UBERON:0002469	44.90	gold quality
muscle layer of sigmoid colon	UBERON:0035805	44.82	gold quality
skin of leg	UBERON:0001511	44.44	gold quality
subcutaneous adipose tissue	UBERON:0002190	44.31	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	44.27	silver quality
small intestine	UBERON:0002108	43.43	silver quality
heart left ventricle	UBERON:0002084	43.41	silver quality
thoracic aorta	UBERON:0001515	43.36	gold quality
hypothalamus	UBERON:0001898	41.66	gold quality
substantia nigra	UBERON:0002038	41.13	silver quality
transverse colon	UBERON:0001157	40.78	silver quality
fundus of stomach	UBERON:0001160	40.17	silver quality
spleen	UBERON:0002106	40.13	silver quality
lower esophagus muscularis layer	UBERON:0035833	39.67	silver quality
ascending aorta	UBERON:0001496	39.38	silver quality
omental fat pad	UBERON:0010414	38.27	silver quality
left lobe of thyroid gland	UBERON:0001120	36.85	silver quality
vagina	UBERON:0000996	36.19	silver quality
skin of abdomen	UBERON:0001416	35.87	silver quality
thoracic mammary gland	UBERON:0005200	35.28	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.08

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.