LINC01020

Summary

LINC01020 (long intergenic non-protein coding RNA 1020, HGNC:27968) is a long non-coding RNA gene on chromosome 5p15.32.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:27968
Approved symbol	LINC01020
Name	long intergenic non-protein coding RNA 1020
Location	5p15.32
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000215231
Ensembl biotype	lncRNA
Entrez	340094
RNAcentral	URS0000759CE1 — lncRNA, 1763 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 17 — 17 lncRNA

ENST00000507599, ENST00000508201, ENST00000509382, ENST00000514474, ENST00000654932, ENST00000656049, ENST00000656591, ENST00000657166, ENST00000658399, ENST00000659550, ENST00000660582, ENST00000662011, ENST00000666520, ENST00000666689, ENST00000668023, ENST00000670808, ENST00000850008

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000507599 — 4 exons

Exon	Start	End
ENSE00002040861	5038670	5038798
ENSE00003864846	5034383	5034537
ENSE00003868979	5057562	5057895
ENSE00003871651	5051178	5051256

Expression profiles

Bgee: expression breadth broad, 49 present calls, max score 81.34.

Top tissues by expression

160 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.34	gold quality
metanephros cortex	UBERON:0010533	71.73	gold quality
adult mammalian kidney	UBERON:0000082	65.08	gold quality
cortex of kidney	UBERON:0001225	62.83	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	61.45	silver quality
upper lobe of lung	UBERON:0008948	59.23	silver quality
kidney	UBERON:0002113	59.17	gold quality
sural nerve	UBERON:0015488	59.09	silver quality
lower lobe of lung	UBERON:0008949	58.99	silver quality
buccal mucosa cell	CL:0002336	58.79	gold quality
left testis	UBERON:0004533	56.12	gold quality
hindlimb stylopod muscle	UBERON:0004252	55.36	silver quality
right testis	UBERON:0004534	55.33	gold quality
testis	UBERON:0000473	55.22	gold quality
metanephros	UBERON:0000081	54.31	gold quality
monocyte	CL:0000576	53.65	gold quality
upper leg skin	UBERON:0004262	48.48	silver quality
gastrocnemius	UBERON:0001388	47.52	gold quality
calcaneal tendon	UBERON:0003701	47.50	silver quality
body of pancreas	UBERON:0001150	44.63	silver quality
prefrontal cortex	UBERON:0000451	43.77	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
tibial nerve	UBERON:0001323	43.20	silver quality
left adrenal gland	UBERON:0001234	43.18	silver quality
anatomical system	UBERON:0000467	43.16	gold quality
ascending aorta	UBERON:0001496	43.15	silver quality
multicellular organism	UBERON:0000468	42.95	gold quality
material anatomical entity	UBERON:0000465	42.94	gold quality
secondary oocyte	CL:0000655	42.57	gold quality
endometrium	UBERON:0001295	42.41	gold quality

Single-cell (SCXA)

Detected in 2 experiment(s), a significant marker in 2.

Experiment	Marker?	Max mean expression
E-CURD-119	yes	47.46
E-ANND-3	yes	3.61

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.