LINC01023

Summary

LINC01023 (long intergenic non-protein coding RNA 1023, HGNC:49004) is a long non-coding RNA gene on chromosome 5q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49004
Approved symbol	LINC01023
Name	long intergenic non-protein coding RNA 1023
Location	5q21.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000272523
Ensembl biotype	lncRNA
Entrez	100652853
RNAcentral	URS000075C2BE — lncRNA, 457 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000606054

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000606054 — 1 exons

Exon	Start	End
ENSE00004257941	108725707	108728744

Expression profiles

Bgee: expression breadth ubiquitous, 173 present calls, max score 91.72.

FANTOM5 (CAGE): breadth broad, TPM avg 1.3069 / max 20.6839, expressed in 804 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
62876	1.3069	804

Top tissues by expression

248 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	91.72	gold quality
buccal mucosa cell	CL:0002336	81.94	silver quality
left lobe of thyroid gland	UBERON:0001120	81.42	gold quality
left adrenal gland cortex	UBERON:0035825	81.01	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	80.96	gold quality
right lobe of thyroid gland	UBERON:0001119	80.44	gold quality
thyroid gland	UBERON:0002046	80.39	gold quality
left adrenal gland	UBERON:0001234	80.18	gold quality
right adrenal gland	UBERON:0001233	80.17	gold quality
lower esophagus mucosa	UBERON:0035834	79.51	gold quality
monocyte	CL:0000576	79.33	gold quality
adrenal cortex	UBERON:0001235	79.21	gold quality
right adrenal gland cortex	UBERON:0035827	79.19	gold quality
mucosa of transverse colon	UBERON:0004991	78.93	gold quality
left coronary artery	UBERON:0001626	78.77	gold quality
tibial nerve	UBERON:0001323	78.64	gold quality
metanephros cortex	UBERON:0010533	78.58	gold quality
leukocyte	CL:0000738	78.46	gold quality
apex of heart	UBERON:0002098	78.42	gold quality
right uterine tube	UBERON:0001302	78.20	gold quality
mucosa of stomach	UBERON:0001199	78.16	gold quality
coronary artery	UBERON:0001621	77.55	gold quality
popliteal artery	UBERON:0002250	77.52	gold quality
tibial artery	UBERON:0007610	77.48	gold quality
adrenal gland	UBERON:0002369	77.35	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	77.31	gold quality
body of pancreas	UBERON:0001150	77.28	gold quality
granulocyte	CL:0000094	77.24	gold quality
adenohypophysis	UBERON:0002196	77.23	gold quality
gastrocnemius	UBERON:0001388	76.98	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.06

Regulation

Is transcription factor: no

Literature-anchored findings (GeneRIF, showing 1)

• LINC01023 Promotes the Hepatoblastoma Tumorigenesis via miR-378a-5p/WNT3 Axis. (PMID:36576714)

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.