LINC01028

Summary

LINC01028 (long intergenic non-protein coding RNA 1028, HGNC:49014) is a long non-coding RNA gene on chromosome 17q24.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49014
Approved symbol	LINC01028
Name	long intergenic non-protein coding RNA 1028
Location	17q24.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00025127
Ensembl gene	ENSG00000267603
Ensembl biotype	lncRNA
Entrez	101928141
RNAcentral	URS000075ED52 — lncRNA, 1173 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000586373, ENST00000588782, ENST00000807141

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000586373 — 2 exons

Exon	Start	End
ENSE00002735673	70051277	70051410
ENSE00002817184	70067185	70068095

Expression profiles

Bgee: expression breadth broad, 99 present calls, max score 85.92.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0342 / max 13.1876, expressed in 11 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
162486	0.0342	11

Top tissues by expression

99 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.92	gold quality
tibial nerve	UBERON:0001323	79.41	gold quality
fundus of stomach	UBERON:0001160	64.21	gold quality
skeletal muscle tissue	UBERON:0001134	63.26	silver quality
thoracic mammary gland	UBERON:0005200	63.00	gold quality
cortex of kidney	UBERON:0001225	60.12	gold quality
omental fat pad	UBERON:0010414	59.50	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.02	gold quality
adipose tissue	UBERON:0001013	58.77	gold quality
subcutaneous adipose tissue	UBERON:0002190	58.14	gold quality
monocyte	CL:0000576	57.94	gold quality
lower esophagus	UBERON:0013473	57.83	gold quality
lower esophagus muscularis layer	UBERON:0035833	57.82	gold quality
tonsil	UBERON:0002372	57.75	gold quality
smooth muscle tissue	UBERON:0001135	56.75	gold quality
right ovary	UBERON:0002118	56.64	gold quality
esophagus	UBERON:0001043	54.70	gold quality
liver	UBERON:0002107	54.57	gold quality
left coronary artery	UBERON:0001626	54.20	gold quality
blood	UBERON:0000178	53.91	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	53.61	gold quality
ovary	UBERON:0000992	53.45	gold quality
left ovary	UBERON:0002119	52.82	gold quality
right adrenal gland cortex	UBERON:0035827	52.48	gold quality
multicellular organism	UBERON:0000468	52.25	gold quality
muscle of leg	UBERON:0001383	52.11	gold quality
gastrocnemius	UBERON:0001388	51.57	gold quality
lung	UBERON:0002048	51.50	gold quality
upper lobe of left lung	UBERON:0008952	51.50	gold quality
urinary bladder	UBERON:0001255	51.22	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	5.85

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.