LINC01029

Summary

LINC01029 (long intergenic non-protein coding RNA 1029, HGNC:49015) is a long non-coding RNA gene on chromosome 18q23.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49015
Approved symbol	LINC01029
Name	long intergenic non-protein coding RNA 1029
Location	18q23
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000265843
Ensembl biotype	lncRNA
Entrez	101927715
RNAcentral	URS000075B050 — lncRNA, 1313 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 30 — 30 lncRNA

ENST00000577408, ENST00000578833, ENST00000579480, ENST00000582805, ENST00000583106, ENST00000656930, ENST00000657337, ENST00000661306, ENST00000662085, ENST00000662109, ENST00000662598, ENST00000666771, ENST00000667842, ENST00000668585, ENST00000669341, ENST00000671271, ENST00000715884, ENST00000715885, ENST00000819455, ENST00000819456, ENST00000819457, ENST00000819458, ENST00000819459, ENST00000819460, ENST00000819461, ENST00000819462, ENST00000819463, ENST00000819464, ENST00000819465, ENST00000819466

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000577408 — 1 exons

Exon	Start	End
ENSE00002718877	77971294	77972542

Expression profiles

Bgee: expression breadth broad, 73 present calls, max score 85.34.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 1.2375 / max 228.7919, expressed in 81 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
172618	1.2375	81

Top tissues by expression

183 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.34	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	72.23	gold quality
endothelial cell	CL:0000115	64.85	gold quality
right testis	UBERON:0004534	62.13	gold quality
left testis	UBERON:0004533	60.64	gold quality
testis	UBERON:0000473	60.60	gold quality
ventricular zone	UBERON:0003053	58.19	silver quality
monocyte	CL:0000576	55.96	gold quality
pericardium	UBERON:0002407	52.29	gold quality
muscle of leg	UBERON:0001383	52.04	gold quality
gastrocnemius	UBERON:0001388	50.63	gold quality
body of pancreas	UBERON:0001150	49.34	gold quality
right lobe of liver	UBERON:0001114	49.26	silver quality
islet of Langerhans	UBERON:0000006	47.61	gold quality
right adrenal gland	UBERON:0001233	47.37	gold quality
tibial artery	UBERON:0007610	47.05	gold quality
prefrontal cortex	UBERON:0000451	45.81	gold quality
tibial nerve	UBERON:0001323	45.55	gold quality
pancreas	UBERON:0001264	45.14	gold quality
aorta	UBERON:0000947	44.93	gold quality
heart left ventricle	UBERON:0002084	44.65	gold quality
cardiac ventricle	UBERON:0002082	44.07	gold quality
blood	UBERON:0000178	43.76	gold quality
anatomical system	UBERON:0000467	43.61	gold quality
material anatomical entity	UBERON:0000465	43.49	gold quality
multicellular organism	UBERON:0000468	43.48	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
vagina	UBERON:0000996	43.31	gold quality
nucleus accumbens	UBERON:0001882	42.97	gold quality
caecum	UBERON:0001153	42.93	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.62

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.