LINC01030

Summary

LINC01030 (long intergenic non-protein coding RNA 1030, HGNC:49016) is a long non-coding RNA gene on chromosome 8q21.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49016
Approved symbol	LINC01030
Name	long intergenic non-protein coding RNA 1030
Location	8q21.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00015085
Ensembl gene	ENSG00000253799
Ensembl biotype	lncRNA
Entrez	101937451
RNAcentral	URS000075E528 — lncRNA, 765 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000517505, ENST00000521975, ENST00000665012, ENST00000735395, ENST00000735396, ENST00000735397, ENST00000735398, ENST00000735575, ENST00000735576, ENST00000735577

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000517505 — 3 exons

Exon	Start	End
ENSE00002120793	90593832	90593971
ENSE00004068327	90592151	90593103
ENSE00004068330	90605768	90606113

Expression profiles

Bgee: expression breadth broad, 94 present calls, max score 88.38.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0857 / max 14.8858, expressed in 47 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
93887	0.0857	47

Top tissues by expression

94 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	88.38	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	83.73	gold quality
testis	UBERON:0000473	66.55	gold quality
right testis	UBERON:0004534	65.40	gold quality
left testis	UBERON:0004533	64.70	gold quality
sural nerve	UBERON:0015488	62.85	gold quality
tonsil	UBERON:0002372	59.06	silver quality
corpus callosum	UBERON:0002336	54.92	gold quality
leukocyte	CL:0000738	54.67	gold quality
prefrontal cortex	UBERON:0000451	53.93	gold quality
calcaneal tendon	UBERON:0003701	53.49	silver quality
monocyte	CL:0000576	53.47	gold quality
cortex of kidney	UBERON:0001225	52.19	silver quality
placenta	UBERON:0001987	50.99	gold quality
C1 segment of cervical spinal cord	UBERON:0006469	50.79	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	50.50	gold quality
liver	UBERON:0002107	50.44	silver quality
blood	UBERON:0000178	50.25	silver quality
islet of Langerhans	UBERON:0000006	50.19	gold quality
frontal cortex	UBERON:0001870	48.92	gold quality
multicellular organism	UBERON:0000468	48.51	gold quality
right lobe of liver	UBERON:0001114	48.39	silver quality
superior frontal gyrus	UBERON:0002661	48.12	silver quality
bone marrow	UBERON:0002371	47.69	silver quality
primary visual cortex	UBERON:0002436	47.37	silver quality
adult mammalian kidney	UBERON:0000082	47.34	silver quality
kidney	UBERON:0002113	47.14	silver quality
substantia nigra	UBERON:0002038	46.57	gold quality
right ovary	UBERON:0002118	45.74	gold quality
heart left ventricle	UBERON:0002084	45.71	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.95

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.