LINC01031

Summary

LINC01031 (long intergenic non-protein coding RNA 1031, HGNC:49017) is a long non-coding RNA gene on chromosome 1q31.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49017
Approved symbol	LINC01031
Name	long intergenic non-protein coding RNA 1031
Location	1q31.2
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00000361
Ensembl gene	ENSG00000232077
Ensembl biotype	lncRNA
Entrez	101929184
RNAcentral	URS00003A1092 — lncRNA, 779 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000420807, ENST00000657700, ENST00000660235, ENST00000660270, ENST00000668188, ENST00000767397, ENST00000767398, ENST00000767399, ENST00000767400, ENST00000767401

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000420807 — 4 exons

Exon	Start	End
ENSE00001686443	193349133	193349275
ENSE00001694285	193304745	193304938
ENSE00001743449	193351104	193351239
ENSE00001775112	193365648	193365953

Expression profiles

Bgee: expression breadth ubiquitous, 114 present calls, max score 80.57.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0157 / max 2.3646, expressed in 9 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
7490	0.0157	9

Top tissues by expression

114 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.57	gold quality
bone marrow cell	CL:0002092	65.74	silver quality
bone marrow	UBERON:0002371	60.62	gold quality
right lung	UBERON:0002167	59.79	gold quality
lung	UBERON:0002048	56.23	gold quality
skeletal muscle tissue	UBERON:0001134	56.12	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	55.07	gold quality
kidney	UBERON:0002113	54.99	gold quality
gall bladder	UBERON:0002110	53.94	gold quality
upper lobe of left lung	UBERON:0008952	53.85	gold quality
monocyte	CL:0000576	53.60	gold quality
stromal cell of endometrium	CL:0002255	53.51	silver quality
leukocyte	CL:0000738	53.29	gold quality
adult mammalian kidney	UBERON:0000082	53.21	gold quality
adrenal tissue	UBERON:0018303	53.07	gold quality
prefrontal cortex	UBERON:0000451	52.86	gold quality
cortex of kidney	UBERON:0001225	52.81	gold quality
blood	UBERON:0000178	51.95	silver quality
lymph node	UBERON:0000029	51.16	gold quality
calcaneal tendon	UBERON:0003701	50.99	silver quality
liver	UBERON:0002107	50.70	gold quality
islet of Langerhans	UBERON:0000006	50.51	gold quality
metanephros cortex	UBERON:0010533	50.46	gold quality
frontal cortex	UBERON:0001870	50.25	gold quality
right lobe of liver	UBERON:0001114	50.22	gold quality
mucosa of stomach	UBERON:0001199	50.15	gold quality
muscle of leg	UBERON:0001383	49.63	gold quality
left ovary	UBERON:0002119	49.58	gold quality
ovary	UBERON:0000992	48.80	gold quality
duodenum	UBERON:0002114	48.79	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.06

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.