LINC01036

Summary

LINC01036 (long intergenic non-protein coding RNA 1036, HGNC:49024) is a long non-coding RNA gene on chromosome 1q31.1.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49024
Approved symbol	LINC01036
Name	long intergenic non-protein coding RNA 1036
Location	1q31.1
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000230426
Ensembl biotype	lncRNA
Entrez	104169671
RNAcentral	URS00007E36A1 — lncRNA, 779 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 57 — 57 lncRNA

ENST00000429725, ENST00000458683, ENST00000609113, ENST00000614505, ENST00000642737, ENST00000643044, ENST00000643891, ENST00000644419, ENST00000644648, ENST00000645691, ENST00000657376, ENST00000659970, ENST00000662036, ENST00000664099, ENST00000667049, ENST00000667298, ENST00000670356, ENST00000692148, ENST00000744930, ENST00000744931, ENST00000744932, ENST00000744933, ENST00000744934, ENST00000772233, ENST00000772234, ENST00000772235, ENST00000772236, ENST00000772237, ENST00000772238, ENST00000772239, ENST00000772240, ENST00000772241, ENST00000772242, ENST00000772243, ENST00000772244, ENST00000772245, ENST00000772246, ENST00000772247, ENST00000772248, ENST00000772249, ENST00000772250, ENST00000772251, ENST00000772252, ENST00000772253, ENST00000772254, ENST00000772255, ENST00000772256, ENST00000772257, ENST00000772258, ENST00000772259, ENST00000772260, ENST00000772261, ENST00000772262, ENST00000772263, ENST00000772264, ENST00000772265, ENST00000847679

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000429725 — 3 exons

Exon	Start	End
ENSE00001635365	187641618	187643860
ENSE00001641212	187641226	187641269
ENSE00001693117	187641376	187641481

Expression profiles

Bgee: expression breadth ubiquitous, 147 present calls, max score 82.09.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.5572 / max 35.4132, expressed in 171 samples.

FANTOM5 promoters (7 alternative TSS)

Promoter ID	TPM avg	Samples expressed
7392	0.2898	57
7382	0.1940	105
7388	0.0205	5
7387	0.0171	3
7384	0.0132	4
7385	0.0119	7
7386	0.0107	3

Top tissues by expression

236 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	82.09	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	81.23	gold quality
bone marrow cell	CL:0002092	70.10	gold quality
cerebellar cortex	UBERON:0002129	64.97	gold quality
cerebellar hemisphere	UBERON:0002245	64.89	gold quality
blood	UBERON:0000178	63.70	gold quality
right hemisphere of cerebellum	UBERON:0014890	63.69	gold quality
cerebellum	UBERON:0002037	63.14	gold quality
calcaneal tendon	UBERON:0003701	61.20	gold quality
leukocyte	CL:0000738	60.14	gold quality
monocyte	CL:0000576	60.04	gold quality
right uterine tube	UBERON:0001302	59.94	gold quality
ventricular zone	UBERON:0003053	59.92	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.49	gold quality
cortical plate	UBERON:0005343	59.49	gold quality
ganglionic eminence	UBERON:0004023	58.67	gold quality
prostate gland	UBERON:0002367	56.53	gold quality
lymph node	UBERON:0000029	55.71	gold quality
prefrontal cortex	UBERON:0000451	55.35	gold quality
left ovary	UBERON:0002119	54.57	gold quality
vermiform appendix	UBERON:0001154	54.48	gold quality
granulocyte	CL:0000094	54.47	gold quality
right ovary	UBERON:0002118	54.06	gold quality
tendon	UBERON:0000043	53.23	gold quality
adult mammalian kidney	UBERON:0000082	53.08	gold quality
ovary	UBERON:0000992	52.74	gold quality
cortex of kidney	UBERON:0001225	52.20	gold quality
Brodmann (1909) area 9	UBERON:0013540	52.03	gold quality
lower lobe of lung	UBERON:0008949	51.86	silver quality
bone marrow	UBERON:0002371	51.60	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	6.41

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.