LINC01039

Summary

LINC01039 (long intergenic non-protein coding RNA 1039, HGNC:49027) is a long non-coding RNA gene on chromosome 13q32.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49027
Approved symbol	LINC01039
Name	long intergenic non-protein coding RNA 1039
Location	13q32.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234168
Ensembl biotype	lncRNA
Entrez	104355149
RNAcentral	URS00007E4AA9 — lncRNA, 3939 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000437113

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000437113 — 3 exons

Exon	Start	End
ENSE00001647354	99577112	99577391
ENSE00001719585	99580169	99580368
ENSE00001803335	99578470	99578639

Expression profiles

Bgee: expression breadth broad, 30 present calls, max score 70.25.

Top tissues by expression

30 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	70.25	gold quality
prefrontal cortex	UBERON:0000451	56.83	gold quality
monocyte	CL:0000576	53.20	silver quality
body of pancreas	UBERON:0001150	49.44	gold quality
placenta	UBERON:0001987	49.30	gold quality
spleen	UBERON:0002106	48.10	gold quality
blood	UBERON:0000178	47.05	silver quality
left adrenal gland	UBERON:0001234	45.36	gold quality
gastrocnemius	UBERON:0001388	44.43	silver quality
ascending aorta	UBERON:0001496	42.85	silver quality
cerebral cortex	UBERON:0000956	42.13	gold quality
left ovary	UBERON:0002119	41.72	silver quality
heart left ventricle	UBERON:0002084	40.42	silver quality
right atrium auricular region	UBERON:0006631	40.40	silver quality
anterior cingulate cortex	UBERON:0009835	39.94	silver quality
skin of leg	UBERON:0001511	39.56	silver quality
descending thoracic aorta	UBERON:0002345	39.38	silver quality
Ammon’s horn	UBERON:0001954	39.18	silver quality
putamen	UBERON:0001874	38.83	silver quality
right adrenal gland	UBERON:0001233	38.27	silver quality
omental fat pad	UBERON:0010414	37.78	silver quality
hypothalamus	UBERON:0001898	37.59	silver quality
C1 segment of cervical spinal cord	UBERON:0006469	35.97	silver quality
thoracic mammary gland	UBERON:0005200	35.66	silver quality
amygdala	UBERON:0001876	35.60	silver quality
right frontal lobe	UBERON:0002810	35.46	silver quality
caudate nucleus	UBERON:0001873	34.49	silver quality
testis	UBERON:0000473	31.73	silver quality
left testis	UBERON:0004533	31.70	silver quality
right testis	UBERON:0004534	31.48	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.