LINC01040

Summary

LINC01040 (long intergenic non-protein coding RNA 1040, HGNC:49028) is a long non-coding RNA gene on chromosome 13q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49028
Approved symbol	LINC01040
Name	long intergenic non-protein coding RNA 1040
Location	13q31.3
Locus type	RNA, long non-coding
Status	Approved
Aliases	TCONS_00021682
Ensembl gene	ENSG00000226037
Ensembl biotype	lncRNA
Entrez	105370308
RNAcentral	URS00008120D9 — lncRNA, 674 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000425048

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000425048 — 2 exons

Exon	Start	End
ENSE00001683448	89500374	89500509
ENSE00001724017	89477608	89478137

Expression profiles

Bgee: expression breadth broad, 34 present calls, max score 82.28.

Top tissues by expression

34 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.28	gold quality
sural nerve	UBERON:0015488	79.80	gold quality
ganglionic eminence	UBERON:0004023	66.25	gold quality
ventricular zone	UBERON:0003053	64.38	gold quality
left testis	UBERON:0004533	62.60	gold quality
right testis	UBERON:0004534	61.64	gold quality
testis	UBERON:0000473	61.41	gold quality
skeletal muscle tissue	UBERON:0001134	61.14	silver quality
multicellular organism	UBERON:0000468	59.11	gold quality
thoracic mammary gland	UBERON:0005200	59.08	silver quality
blood	UBERON:0000178	56.29	gold quality
liver	UBERON:0002107	55.02	gold quality
kidney	UBERON:0002113	51.44	gold quality
tibial nerve	UBERON:0001323	51.28	gold quality
monocyte	CL:0000576	50.54	silver quality
stomach	UBERON:0000945	50.53	silver quality
gastrocnemius	UBERON:0001388	50.31	gold quality
adult mammalian kidney	UBERON:0000082	49.16	gold quality
esophagus	UBERON:0001043	48.71	gold quality
skin of abdomen	UBERON:0001416	47.59	silver quality
lower esophagus muscularis layer	UBERON:0035833	46.37	gold quality
right lobe of liver	UBERON:0001114	45.63	silver quality
tibial artery	UBERON:0007610	45.13	silver quality
esophagus mucosa	UBERON:0002469	44.10	silver quality
caudate nucleus	UBERON:0001873	41.87	silver quality
right atrium auricular region	UBERON:0006631	41.02	silver quality
body of stomach	UBERON:0001161	39.93	silver quality
body of pancreas	UBERON:0001150	39.77	silver quality
anterior cingulate cortex	UBERON:0009835	39.43	silver quality
substantia nigra	UBERON:0002038	38.55	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.30

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.