LINC01046

Summary

LINC01046 (long intergenic non-protein coding RNA 1046, HGNC:49040) is a long non-coding RNA gene on chromosome 13q12.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49040
Approved symbol	LINC01046
Name	long intergenic non-protein coding RNA 1046
Location	13q12.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000233405
Ensembl biotype	lncRNA
Entrez	103689843
RNAcentral	URS0000214640 — lncRNA, 405 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000443719, ENST00000653059, ENST00000739806, ENST00000739807, ENST00000739808

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000443719 — 4 exons

Exon	Start	End
ENSE00001653384	21234489	21234653
ENSE00003856689	21225085	21225495
ENSE00003869340	21225979	21226061
ENSE00004075305	21234886	21235204

Expression profiles

Bgee: expression breadth broad, 84 present calls, max score 80.29.

Top tissues by expression

84 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	80.29	gold quality
bone marrow cell	CL:0002092	79.90	gold quality
monocyte	CL:0000576	55.21	gold quality
corpus callosum	UBERON:0002336	54.87	gold quality
urinary bladder	UBERON:0001255	54.52	gold quality
hindlimb stylopod muscle	UBERON:0004252	53.73	silver quality
adrenal tissue	UBERON:0018303	53.26	gold quality
blood	UBERON:0000178	53.16	silver quality
liver	UBERON:0002107	52.85	silver quality
testis	UBERON:0000473	52.44	gold quality
left testis	UBERON:0004533	52.43	gold quality
prefrontal cortex	UBERON:0000451	51.01	gold quality
calcaneal tendon	UBERON:0003701	50.56	silver quality
right testis	UBERON:0004534	50.46	gold quality
superior frontal gyrus	UBERON:0002661	49.99	gold quality
endometrium	UBERON:0001295	49.78	silver quality
kidney	UBERON:0002113	48.99	silver quality
lymph node	UBERON:0000029	48.41	silver quality
fallopian tube	UBERON:0003889	47.21	gold quality
frontal cortex	UBERON:0001870	47.19	silver quality
primary visual cortex	UBERON:0002436	46.99	silver quality
stomach	UBERON:0000945	46.17	gold quality
right lobe of liver	UBERON:0001114	46.13	silver quality
lung	UBERON:0002048	46.03	silver quality
multicellular organism	UBERON:0000468	45.98	gold quality
islet of Langerhans	UBERON:0000006	45.78	silver quality
olfactory segment of nasal mucosa	UBERON:0005386	45.74	silver quality
gastrocnemius	UBERON:0001388	45.29	silver quality
cerebellum	UBERON:0002037	43.81	silver quality
cerebellar hemisphere	UBERON:0002245	43.76	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.98

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.