LINC01047

Summary

LINC01047 (long intergenic non-protein coding RNA 1047, HGNC:49041) is a long non-coding RNA gene on chromosome 13q31.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49041
Approved symbol	LINC01047
Name	long intergenic non-protein coding RNA 1047
Location	13q31.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000232225
Ensembl biotype	lncRNA
Entrez	105616982
RNAcentral	URS0000812131 — lncRNA, 791 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 3 — 3 lncRNA

ENST00000415193, ENST00000445027, ENST00000825032

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000415193 — 5 exons

Exon	Start	End
ENSE00001674074	89220534	89220559
ENSE00001725223	89236819	89236890
ENSE00001752470	89219571	89219709
ENSE00001780335	89218235	89218294
ENSE00001801537	89214847	89215327

Expression profiles

Bgee: expression breadth broad, 96 present calls, max score 85.39.

Top tissues by expression

96 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.39	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	63.18	gold quality
ganglionic eminence	UBERON:0004023	60.52	gold quality
cortical plate	UBERON:0005343	58.31	gold quality
lymph node	UBERON:0000029	56.90	gold quality
liver	UBERON:0002107	53.77	silver quality
monocyte	CL:0000576	53.21	gold quality
duodenum	UBERON:0002114	52.10	gold quality
blood	UBERON:0000178	51.51	gold quality
bone marrow	UBERON:0002371	51.00	silver quality
prefrontal cortex	UBERON:0000451	50.90	gold quality
islet of Langerhans	UBERON:0000006	50.26	gold quality
right adrenal gland cortex	UBERON:0035827	48.03	gold quality
pancreas	UBERON:0001264	47.94	gold quality
myometrium	UBERON:0001296	47.44	gold quality
right lobe of liver	UBERON:0001114	47.41	silver quality
endocervix	UBERON:0000458	46.84	gold quality
body of pancreas	UBERON:0001150	46.66	silver quality
muscle of leg	UBERON:0001383	45.84	silver quality
tibial artery	UBERON:0007610	45.60	silver quality
frontal cortex	UBERON:0001870	45.58	gold quality
gastrocnemius	UBERON:0001388	45.38	silver quality
heart left ventricle	UBERON:0002084	45.31	silver quality
endometrium	UBERON:0001295	45.13	silver quality
left ovary	UBERON:0002119	45.11	silver quality
cerebellar hemisphere	UBERON:0002245	44.97	silver quality
urinary bladder	UBERON:0001255	44.91	silver quality
gall bladder	UBERON:0002110	44.63	gold quality
right hemisphere of cerebellum	UBERON:0014890	44.59	silver quality
right adrenal gland	UBERON:0001233	44.44	silver quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	2.77

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.