LINC01049

Summary

LINC01049 (long intergenic non-protein coding RNA 1049, HGNC:49043) is a long non-coding RNA gene on chromosome 13q31.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49043
Approved symbol	LINC01049
Name	long intergenic non-protein coding RNA 1049
Location	13q31.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000234384
Ensembl biotype	lncRNA
Entrez	101927224
RNAcentral	URS0000759EF7 — lncRNA, 1003 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000426840, ENST00000728238, ENST00000760283, ENST00000760284, ENST00000760285

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000426840 — 6 exons

Exon	Start	End
ENSE00001597464	90513488	90513572
ENSE00001637482	90532776	90532820
ENSE00001647531	90534755	90535080
ENSE00001652434	90493287	90493417
ENSE00001741725	90498210	90498265
ENSE00001773534	90527400	90527498

Expression profiles

Bgee: expression breadth broad, 31 present calls, max score 85.26.

Top tissues by expression

164 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	85.26	gold quality
primordial germ cell in gonad	CL:0000670 ∩ UBERON:0000991	77.35	silver quality
epithelium of nasopharynx	UBERON:0001951	63.12	gold quality
amniotic fluid	UBERON:0000173	60.33	gold quality
secondary oocyte	CL:0000655	59.32	gold quality
upper leg skin	UBERON:0004262	53.93	gold quality
monocyte	CL:0000576	52.10	silver quality
lower lobe of lung	UBERON:0008949	51.95	silver quality
upper lobe of lung	UBERON:0008948	51.58	silver quality
skin of hip	UBERON:0001554	48.79	silver quality
buccal mucosa cell	CL:0002336	48.03	gold quality
lateral globus pallidus	UBERON:0002476	47.03	gold quality
muscle of leg	UBERON:0001383	45.09	gold quality
cardia of stomach	UBERON:0001162	44.56	gold quality
prefrontal cortex	UBERON:0000451	43.91	silver quality
inferior vagus X ganglion	UBERON:0005363	43.53	gold quality
oocyte	CL:0000023	43.52	gold quality
subthalamic nucleus	UBERON:0001906	43.46	gold quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	43.37	gold quality
tibial artery	UBERON:0007610	43.37	silver quality
gastrocnemius	UBERON:0001388	43.19	silver quality
aorta	UBERON:0000947	42.86	silver quality
blood	UBERON:0000178	42.74	gold quality
ascending aorta	UBERON:0001496	42.73	silver quality
anterior cingulate cortex	UBERON:0009835	42.27	silver quality
adult mammalian kidney	UBERON:0000082	42.26	silver quality
substantia nigra pars compacta	UBERON:0001965	42.23	gold quality
heart left ventricle	UBERON:0002084	42.17	silver quality
body of pancreas	UBERON:0001150	42.11	silver quality
colonic mucosa	UBERON:0000317	41.69	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 1.

Experiment	Marker?	Max mean expression
E-ANND-3	yes	3.28

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.