LINC01050

Summary

LINC01050 (long intergenic non-protein coding RNA 1050, HGNC:49044) is a long non-coding RNA gene on chromosome 13q14.11.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49044
Approved symbol	LINC01050
Name	long intergenic non-protein coding RNA 1050
Location	13q14.11
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000271216
Ensembl biotype	lncRNA
Entrez	103689845
RNAcentral	URS000060E43B — lncRNA, 760 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 5 — 5 lncRNA

ENST00000604485, ENST00000826372, ENST00000826373, ENST00000826374, ENST00000826375

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000604485 — 5 exons

Exon	Start	End
ENSE00003620882	42812392	42813344
ENSE00003671729	42811519	42811842
ENSE00003687597	42810366	42810630
ENSE00003865600	42814664	42814897
ENSE00003875414	42814322	42814472

Expression profiles

Bgee: expression breadth broad, 69 present calls, max score 60.99.

Top tissues by expression

69 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
islet of Langerhans	UBERON:0000006	60.99	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	58.31	gold quality
hindlimb stylopod muscle	UBERON:0004252	57.53	gold quality
stromal cell of endometrium	CL:0002255	57.00	gold quality
descending thoracic aorta	UBERON:0002345	55.83	gold quality
vermiform appendix	UBERON:0001154	54.91	gold quality
myometrium	UBERON:0001296	54.81	gold quality
right atrium auricular region	UBERON:0006631	54.48	gold quality
left uterine tube	UBERON:0001303	53.81	gold quality
gall bladder	UBERON:0002110	53.75	gold quality
liver	UBERON:0002107	53.67	silver quality
endometrium	UBERON:0001295	53.48	gold quality
urinary bladder	UBERON:0001255	52.40	gold quality
right ovary	UBERON:0002118	52.31	gold quality
minor salivary gland	UBERON:0001830	52.00	gold quality
prefrontal cortex	UBERON:0000451	51.71	silver quality
lymph node	UBERON:0000029	50.83	silver quality
subcutaneous adipose tissue	UBERON:0002190	50.63	gold quality
heart	UBERON:0000948	50.46	gold quality
thoracic aorta	UBERON:0001515	50.39	gold quality
adipose tissue	UBERON:0001013	50.34	gold quality
ascending aorta	UBERON:0001496	50.00	gold quality
omental fat pad	UBERON:0010414	49.92	gold quality
multicellular organism	UBERON:0000468	49.12	gold quality
thoracic mammary gland	UBERON:0005200	48.92	gold quality
left lobe of thyroid gland	UBERON:0001120	48.91	gold quality
smooth muscle tissue	UBERON:0001135	48.86	gold quality
anterior cingulate cortex	UBERON:0009835	48.57	silver quality
heart left ventricle	UBERON:0002084	48.31	gold quality
body of pancreas	UBERON:0001150	48.27	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.12

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.