LINC01054

Summary

LINC01054 (long intergenic non-protein coding RNA 1054, HGNC:49048) is a long non-coding RNA gene on chromosome 13q34.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49048
Approved symbol	LINC01054
Name	long intergenic non-protein coding RNA 1054
Location	13q34
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000229723
Ensembl biotype	lncRNA
Entrez	104355150
RNAcentral	URS00007E3C82 — lncRNA, 316 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 4 — 4 lncRNA

ENST00000446989, ENST00000749485, ENST00000749486, ENST00000749487

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000446989 — 3 exons

Exon	Start	End
ENSE00001282154	114329559	114329845
ENSE00001692545	114330666	114330778
ENSE00001786235	114333835	114333948

Expression profiles

Bgee: expression breadth ubiquitous, 105 present calls, max score 67.38.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0064 / max 4.5344, expressed in 2 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
138413	0.0064	2

Top tissues by expression

105 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
ventricular zone	UBERON:0003053	67.38	gold quality
ganglionic eminence	UBERON:0004023	64.26	gold quality
muscle tissue	UBERON:0002385	60.67	gold quality
hindlimb stylopod muscle	UBERON:0004252	59.90	gold quality
skeletal muscle tissue	UBERON:0001134	59.74	gold quality
monocyte	CL:0000576	54.55	gold quality
lymph node	UBERON:0000029	54.38	gold quality
prefrontal cortex	UBERON:0000451	54.01	gold quality
liver	UBERON:0002107	53.88	gold quality
vermiform appendix	UBERON:0001154	53.06	gold quality
placenta	UBERON:0001987	52.82	gold quality
bone marrow	UBERON:0002371	52.50	gold quality
gall bladder	UBERON:0002110	51.56	gold quality
muscle of leg	UBERON:0001383	51.35	gold quality
blood	UBERON:0000178	51.13	silver quality
gastrocnemius	UBERON:0001388	51.05	gold quality
islet of Langerhans	UBERON:0000006	50.86	gold quality
right lobe of liver	UBERON:0001114	50.78	gold quality
superior frontal gyrus	UBERON:0002661	50.34	gold quality
cortex of kidney	UBERON:0001225	49.59	silver quality
right ovary	UBERON:0002118	49.26	gold quality
lower esophagus mucosa	UBERON:0035834	49.25	gold quality
left ovary	UBERON:0002119	48.74	gold quality
ovary	UBERON:0000992	48.70	gold quality
tibial artery	UBERON:0007610	48.64	gold quality
heart left ventricle	UBERON:0002084	47.60	gold quality
omental fat pad	UBERON:0010414	47.18	gold quality
body of pancreas	UBERON:0001150	47.17	gold quality
adipose tissue	UBERON:0001013	46.62	gold quality
left coronary artery	UBERON:0001626	46.50	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.14

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.