LINC01055

Summary

LINC01055 (long intergenic non-protein coding RNA 1055, HGNC:49049) is a long non-coding RNA gene on chromosome 13q14.13.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49049
Approved symbol	LINC01055
Name	long intergenic non-protein coding RNA 1055
Location	13q14.13
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000235366
Ensembl biotype	lncRNA
Entrez	103752581
RNAcentral	URS00007E3780 — lncRNA, 706 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000435067

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000435067 — 4 exons

Exon	Start	End
ENSE00001767212	45682302	45682419
ENSE00002258396	45685064	45685200
ENSE00003981851	45701027	45701187
ENSE00003981852	45680182	45681491

Expression profiles

Bgee: expression breadth ubiquitous, 103 present calls, max score 79.48.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.3400 / max 60.6295, expressed in 69 samples.

FANTOM5 promoters (7 alternative TSS)

Promoter ID	TPM avg	Samples expressed
137100	0.1198	41
137101	0.1043	48
137102	0.0378	20
137099	0.0367	12
137103	0.0268	12
137105	0.0105	5
137104	0.0042	2

Top tissues by expression

103 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
adult mammalian kidney	UBERON:0000082	79.48	gold quality
cortex of kidney	UBERON:0001225	79.25	gold quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	77.77	silver quality
kidney	UBERON:0002113	77.65	gold quality
metanephros cortex	UBERON:0010533	76.49	gold quality
bone marrow cell	CL:0002092	74.34	gold quality
bone marrow	UBERON:0002371	70.16	gold quality
sural nerve	UBERON:0015488	63.37	silver quality
cortical plate	UBERON:0005343	60.23	silver quality
duodenum	UBERON:0002114	60.07	gold quality
right testis	UBERON:0004534	59.26	gold quality
testis	UBERON:0000473	57.19	gold quality
olfactory segment of nasal mucosa	UBERON:0005386	56.27	gold quality
left testis	UBERON:0004533	56.21	gold quality
rectum	UBERON:0001052	55.80	gold quality
right atrium auricular region	UBERON:0006631	54.71	gold quality
heart	UBERON:0000948	52.06	gold quality
liver	UBERON:0002107	51.85	gold quality
left coronary artery	UBERON:0001626	51.80	gold quality
right ovary	UBERON:0002118	51.47	gold quality
prefrontal cortex	UBERON:0000451	50.66	silver quality
endometrium	UBERON:0001295	50.57	silver quality
lymph node	UBERON:0000029	50.48	silver quality
muscle tissue	UBERON:0002385	50.37	silver quality
monocyte	CL:0000576	50.24	silver quality
islet of Langerhans	UBERON:0000006	49.95	silver quality
mucosa of transverse colon	UBERON:0004991	49.95	gold quality
right lobe of liver	UBERON:0001114	49.85	silver quality
blood	UBERON:0000178	49.77	silver quality
small intestine	UBERON:0002108	49.29	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	2.60

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.