LINC01058

Summary

LINC01058 (long intergenic non-protein coding RNA 1058, HGNC:49061) is a long non-coding RNA gene on chromosome 13q12.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49061
Approved symbol	LINC01058
Name	long intergenic non-protein coding RNA 1058
Location	13q12.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000225039
Ensembl biotype	lncRNA
Entrez	103724387
RNAcentral	URS00007E4BCC — lncRNA, 535 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 2 — 2 lncRNA

ENST00000420694, ENST00000819313

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000420694 — 3 exons

Exon	Start	End
ENSE00004224096	30416251	30416507
ENSE00004224097	30418038	30419945
ENSE00004224098	30422217	30422282

Expression profiles

Bgee: expression breadth ubiquitous, 119 present calls, max score 74.03.

FANTOM5 (CAGE): breadth broad, TPM avg 1.6138 / max 401.2813, expressed in 548 samples.

FANTOM5 promoters (2 alternative TSS)

Promoter ID	TPM avg	Samples expressed
136635	1.1049	358
136634	0.5089	195

Top tissues by expression

119 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
sural nerve	UBERON:0015488	74.03	gold quality
tonsil	UBERON:0002372	70.22	gold quality
lymph node	UBERON:0000029	69.49	gold quality
bone marrow cell	CL:0002092	68.99	silver quality
ventricular zone	UBERON:0003053	68.31	gold quality
hindlimb stylopod muscle	UBERON:0004252	66.99	gold quality
vermiform appendix	UBERON:0001154	66.36	gold quality
skeletal muscle tissue	UBERON:0001134	66.00	gold quality
smooth muscle tissue	UBERON:0001135	65.89	gold quality
stromal cell of endometrium	CL:0002255	65.80	gold quality
bone marrow	UBERON:0002371	63.25	gold quality
muscle of leg	UBERON:0001383	62.47	gold quality
gall bladder	UBERON:0002110	62.15	gold quality
leukocyte	CL:0000738	61.76	gold quality
gastrocnemius	UBERON:0001388	61.64	gold quality
monocyte	CL:0000576	61.44	gold quality
islet of Langerhans	UBERON:0000006	61.04	gold quality
duodenum	UBERON:0002114	60.16	gold quality
left testis	UBERON:0004533	59.57	gold quality
popliteal artery	UBERON:0002250	59.24	gold quality
tibial artery	UBERON:0007610	59.24	gold quality
thoracic mammary gland	UBERON:0005200	59.18	gold quality
testis	UBERON:0000473	58.88	gold quality
rectum	UBERON:0001052	58.57	gold quality
myometrium	UBERON:0001296	58.53	gold quality
urinary bladder	UBERON:0001255	58.49	gold quality
blood	UBERON:0000178	58.29	gold quality
endocervix	UBERON:0000458	57.79	gold quality
right testis	UBERON:0004534	57.59	gold quality
liver	UBERON:0002107	57.57	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.38

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.