LINC01069

Summary

LINC01069 (long intergenic non-protein coding RNA 1069, HGNC:49109) is a long non-coding RNA gene on chromosome 13q22.3.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49109
Approved symbol	LINC01069
Name	long intergenic non-protein coding RNA 1069
Location	13q22.3
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000236133
Ensembl biotype	lncRNA
Entrez	101927176
RNAcentral	URS000075C755 — lncRNA, 2615 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 10 — 10 lncRNA

ENST00000452933, ENST00000662401, ENST00000662574, ENST00000665945, ENST00000666633, ENST00000670477, ENST00000724382, ENST00000724383, ENST00000724384, ENST00000724385

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000452933 — 5 exons

Exon	Start	End
ENSE00001675820	77990338	77990646
ENSE00001720039	77989372	77989608
ENSE00003854565	77987914	77988078
ENSE00003863599	77997816	77997844
ENSE00003867719	77981738	77981984

Expression profiles

Bgee: expression breadth broad, 64 present calls, max score 68.42.

FANTOM5 (CAGE): breadth tissue_specific, TPM avg 0.0084 / max 6.3152, expressed in 3 samples.

FANTOM5 promoters (1 alternative TSS)

Promoter ID	TPM avg	Samples expressed
137707	0.0084	3

Top tissues by expression

176 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
left testis	UBERON:0004533	68.42	gold quality
mucosa of paranasal sinus	UBERON:0005030	67.31	gold quality
testis	UBERON:0000473	66.29	gold quality
right testis	UBERON:0004534	65.79	gold quality
sural nerve	UBERON:0015488	64.83	silver quality
skeletal muscle tissue of rectus abdominis	UBERON:0004511	64.48	gold quality
epithelium of nasopharynx	UBERON:0001951	61.55	gold quality
cardia of stomach	UBERON:0001162	61.49	gold quality
ventral tegmental area	UBERON:0002691	58.42	gold quality
dorsal root ganglion	UBERON:0000044	57.95	gold quality
superior vestibular nucleus	UBERON:0007227	57.93	gold quality
superior surface of tongue	UBERON:0007371	57.89	gold quality
subthalamic nucleus	UBERON:0001906	57.86	gold quality
medulla oblongata	UBERON:0001896	57.79	gold quality
saphenous vein	UBERON:0007318	57.55	gold quality
dorsal plus ventral thalamus	UBERON:0001897	57.48	gold quality
pericardium	UBERON:0002407	57.43	gold quality
inferior vagus X ganglion	UBERON:0005363	57.36	gold quality
uterine cervix	UBERON:0000002	57.25	gold quality
trigeminal ganglion	UBERON:0001675	57.19	gold quality
corpus callosum	UBERON:0002336	57.19	gold quality
tongue	UBERON:0001723	57.13	gold quality
thymus	UBERON:0002370	57.00	gold quality
pons	UBERON:0000988	56.76	gold quality
renal medulla	UBERON:0000362	56.63	gold quality
cerebellar vermis	UBERON:0004720	56.52	gold quality
substantia nigra pars reticulata	UBERON:0001966	56.51	gold quality
trachea	UBERON:0003126	56.36	gold quality
caecum	UBERON:0001153	56.29	gold quality
lateral nuclear group of thalamus	UBERON:0002736	56.26	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	1.63

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.