LINC01078

Summary

LINC01078 (long intergenic non-protein coding RNA 1078, HGNC:49121) is a long non-coding RNA gene on chromosome 13q22.2.

At a glance

• Gene type: non-coding (lncRNA) — no protein product; not a drug target. Variant/disease associations are omitted (they would be positional, from an overlapping protein-coding gene).

Identifiers

Gene identifiers

Field	Value
HGNC ID	HGNC:49121
Approved symbol	LINC01078
Name	long intergenic non-protein coding RNA 1078
Location	13q22.2
Locus type	RNA, long non-coding
Status	Approved
Ensembl gene	ENSG00000223880
Ensembl biotype	lncRNA
Entrez	106144536
RNAcentral	URS00008E39BB — lncRNA, 441 nt, 1 organism(s)

Gene structure

Transcript identifiers

Ensembl transcripts: 1 — 1 lncRNA

ENST00000434832

RefSeq mRNA: 0 — MANE Select: None

Canonical transcript exons

ENST00000434832 — 2 exons

Exon	Start	End
ENSE00001633295	75250480	75250601
ENSE00001797011	75251748	75252012

Expression profiles

Bgee: expression breadth broad, 54 present calls, max score 82.86.

Top tissues by expression

54 total, by Bgee expression score (0-100, higher = more expressed):

Tissue	Anatomy ID	Expression score	Quality
male germ line stem cell (sensu Vertebrata) in testis	CL:0000089 ∩ UBERON:0000473	82.86	gold quality
kidney	UBERON:0002113	64.86	silver quality
tonsil	UBERON:0002372	63.08	silver quality
monocyte	CL:0000576	59.35	gold quality
bone marrow	UBERON:0002371	58.52	gold quality
primary visual cortex	UBERON:0002436	58.09	gold quality
blood	UBERON:0000178	56.11	gold quality
liver	UBERON:0002107	54.84	silver quality
calcaneal tendon	UBERON:0003701	52.82	gold quality
right lobe of liver	UBERON:0001114	51.32	silver quality
gastrocnemius	UBERON:0001388	50.60	gold quality
corpus callosum	UBERON:0002336	49.41	silver quality
vagina	UBERON:0000996	47.78	gold quality
body of stomach	UBERON:0001161	47.37	gold quality
esophagogastric junction muscularis propria	UBERON:0035841	47.12	gold quality
heart left ventricle	UBERON:0002084	47.06	gold quality
tibial artery	UBERON:0007610	45.98	gold quality
stomach	UBERON:0000945	45.96	gold quality
rectum	UBERON:0001052	45.51	gold quality
heart	UBERON:0000948	45.40	silver quality
Brodmann (1909) area 9	UBERON:0013540	45.09	gold quality
esophagus mucosa	UBERON:0002469	44.97	gold quality
subcutaneous adipose tissue	UBERON:0002190	44.79	gold quality
thoracic aorta	UBERON:0001515	44.72	gold quality
brain	UBERON:0000955	44.46	silver quality
right atrium auricular region	UBERON:0006631	44.30	gold quality
lower esophagus muscularis layer	UBERON:0035833	44.09	gold quality
omental fat pad	UBERON:0010414	43.90	gold quality
dorsolateral prefrontal cortex	UBERON:0009834	43.64	gold quality
spleen	UBERON:0002106	43.45	gold quality

Single-cell (SCXA)

Detected in 1 experiment(s), a significant marker in 0.

Experiment	Marker?	Max mean expression
E-ANND-3	no	0.98

Regulation

Is transcription factor: no

Cross-species orthologs

0 orthologs

Protein

Non-coding RNA — no protein product; not a drug target.

Function

No curated pathway, Gene-Ontology, or interaction data.

Disease & clinical

No curated disease, variant, or cancer-driver associations.

Drugs & pharmacology

No drug or pharmacology data — not an established drug target.